miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23199 5' -57.4 NC_005259.1 + 59291 0.68 0.525509
Target:  5'- uGUGcAGAccuacgcUGUCGugGCGGCAgCGGCGa -3'
miRNA:   3'- -CGC-UCUu------ACGGCugUGCCGUgGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 67218 0.68 0.525509
Target:  5'- gGCGGGGucgAUGCCGAcCACGGCGgUGuaGg -3'
miRNA:   3'- -CGCUCU---UACGGCU-GUGCCGUgGCcgU- -5'
23199 5' -57.4 NC_005259.1 + 57446 0.68 0.522436
Target:  5'- gGCGAGGuugGUG-CGACGCugcggcaggccgguGGCACCGGaCAc -3'
miRNA:   3'- -CGCUCU---UACgGCUGUG--------------CCGUGGCC-GU- -5'
23199 5' -57.4 NC_005259.1 + 29933 0.68 0.556581
Target:  5'- cGCGuGGccGCC-ACGCGGC-CCGGUc -3'
miRNA:   3'- -CGCuCUuaCGGcUGUGCCGuGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 57297 0.68 0.56706
Target:  5'- uCGu-AGUGCaCGACAuCGaGCACCGGCGg -3'
miRNA:   3'- cGCucUUACG-GCUGU-GC-CGUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 27997 0.68 0.515295
Target:  5'- gGUGcGggUGCCGGgGCGGgguCGCCGGgGu -3'
miRNA:   3'- -CGCuCuuACGGCUgUGCC---GUGGCCgU- -5'
23199 5' -57.4 NC_005259.1 + 32991 0.68 0.546158
Target:  5'- cCGAGggUGCCGcCAcgcccgauguCGGCAccacagcccauCCGGCu -3'
miRNA:   3'- cGCUCuuACGGCuGU----------GCCGU-----------GGCCGu -5'
23199 5' -57.4 NC_005259.1 + 40067 0.69 0.465545
Target:  5'- cGCGAuGAcccauggGCCGACGC-GCACCGaGCGc -3'
miRNA:   3'- -CGCU-CUua-----CGGCUGUGcCGUGGC-CGU- -5'
23199 5' -57.4 NC_005259.1 + 26826 0.69 0.485161
Target:  5'- gGCGGuGGUGCCGGgGCGGUcuGCUcgGGCAg -3'
miRNA:   3'- -CGCUcUUACGGCUgUGCCG--UGG--CCGU- -5'
23199 5' -57.4 NC_005259.1 + 37185 0.69 0.486152
Target:  5'- cGCGAGGAcgagcugcggcccuUGCCGcCACcgccgccgccgccggGGCGCUGGCc -3'
miRNA:   3'- -CGCUCUU--------------ACGGCuGUG---------------CCGUGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 43884 0.69 0.495115
Target:  5'- aGCGuuGccGCCGACAUugcccGCGCCGGCu -3'
miRNA:   3'- -CGCucUuaCGGCUGUGc----CGUGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 8222 0.69 0.505161
Target:  5'- aGCGAGcgugcgguGGUGCCGACACccuGCcuuACCGGUc -3'
miRNA:   3'- -CGCUC--------UUACGGCUGUGc--CG---UGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 41621 0.7 0.43692
Target:  5'- cGCGAGGcUGaCCaugGugGCGGUGCCGGUc -3'
miRNA:   3'- -CGCUCUuAC-GG---CugUGCCGUGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 28760 0.7 0.44635
Target:  5'- cGUGAGAucgucgccgGUGCCGACGaGGUacccGCCGGUc -3'
miRNA:   3'- -CGCUCU---------UACGGCUGUgCCG----UGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 35657 0.7 0.427604
Target:  5'- gGCGAGggUgGCCaGCGCGGUGgUGGUg -3'
miRNA:   3'- -CGCUCuuA-CGGcUGUGCCGUgGCCGu -5'
23199 5' -57.4 NC_005259.1 + 4513 0.71 0.374288
Target:  5'- cCGGGAGUGgCGcuGCGCGGCAccCCGGUc -3'
miRNA:   3'- cGCUCUUACgGC--UGUGCCGU--GGCCGu -5'
23199 5' -57.4 NC_005259.1 + 67956 0.71 0.391555
Target:  5'- uGCGGGuuGUGCUGuaGCGCGcGCAgCGGCGu -3'
miRNA:   3'- -CGCUCu-UACGGC--UGUGC-CGUgGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 8636 0.71 0.357545
Target:  5'- gGCGAGAAUgGCgGGCACgaGGCugUGGUc -3'
miRNA:   3'- -CGCUCUUA-CGgCUGUG--CCGugGCCGu -5'
23199 5' -57.4 NC_005259.1 + 29051 0.72 0.325661
Target:  5'- aCGAGA--GCCGcgaGCGCGGUAUCGGCc -3'
miRNA:   3'- cGCUCUuaCGGC---UGUGCCGUGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 3107 0.72 0.318027
Target:  5'- aGCGGGcg-GCCauuGCGCGGCACCgugGGCAg -3'
miRNA:   3'- -CGCUCuuaCGGc--UGUGCCGUGG---CCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.