miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23199 5' -57.4 NC_005259.1 + 32991 0.68 0.546158
Target:  5'- cCGAGggUGCCGcCAcgcccgauguCGGCAccacagcccauCCGGCu -3'
miRNA:   3'- cGCUCuuACGGCuGU----------GCCGU-----------GGCCGu -5'
23199 5' -57.4 NC_005259.1 + 33105 0.67 0.598765
Target:  5'- cGCGAGcGUGCCuguagggccACGCGGCagccGCCGcGCGu -3'
miRNA:   3'- -CGCUCuUACGGc--------UGUGCCG----UGGC-CGU- -5'
23199 5' -57.4 NC_005259.1 + 35657 0.7 0.427604
Target:  5'- gGCGAGggUgGCCaGCGCGGUGgUGGUg -3'
miRNA:   3'- -CGCUCuuA-CGGcUGUGCCGUgGCCGu -5'
23199 5' -57.4 NC_005259.1 + 35703 0.66 0.672212
Target:  5'- gGCGAGGGgucGCUGACGaGGUAuccgcccgacgacCCGGCGc -3'
miRNA:   3'- -CGCUCUUa--CGGCUGUgCCGU-------------GGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 37185 0.69 0.486152
Target:  5'- cGCGAGGAcgagcugcggcccuUGCCGcCACcgccgccgccgccggGGCGCUGGCc -3'
miRNA:   3'- -CGCUCUU--------------ACGGCuGUG---------------CCGUGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 38441 0.66 0.641371
Target:  5'- uCGAGAccgaaaAUGCCGuGCGagGGCACCgagGGCAg -3'
miRNA:   3'- cGCUCU------UACGGC-UGUg-CCGUGG---CCGU- -5'
23199 5' -57.4 NC_005259.1 + 40067 0.69 0.465545
Target:  5'- cGCGAuGAcccauggGCCGACGC-GCACCGaGCGc -3'
miRNA:   3'- -CGCU-CUua-----CGGCUGUGcCGUGGC-CGU- -5'
23199 5' -57.4 NC_005259.1 + 41621 0.7 0.43692
Target:  5'- cGCGAGGcUGaCCaugGugGCGGUGCCGGUc -3'
miRNA:   3'- -CGCUCUuAC-GG---CugUGCCGUGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 43884 0.69 0.495115
Target:  5'- aGCGuuGccGCCGACAUugcccGCGCCGGCu -3'
miRNA:   3'- -CGCucUuaCGGCUGUGc----CGUGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 44463 0.66 0.694373
Target:  5'- cCGGGGAUGCCGcCGCccuGGC-CgGGCc -3'
miRNA:   3'- cGCUCUUACGGCuGUG---CCGuGgCCGu -5'
23199 5' -57.4 NC_005259.1 + 45119 0.68 0.546158
Target:  5'- cCGAGAgugGUGCCGACGaGGU--CGGCAa -3'
miRNA:   3'- cGCUCU---UACGGCUGUgCCGugGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 47009 0.66 0.694373
Target:  5'- cGCGAGGAaGCCGAcCACGaccgccuccaGCagGCCGGgGa -3'
miRNA:   3'- -CGCUCUUaCGGCU-GUGC----------CG--UGGCCgU- -5'
23199 5' -57.4 NC_005259.1 + 49351 0.66 0.694373
Target:  5'- gGCGAGAgGUGCCG-CGCGaugaagagGCCGGUg -3'
miRNA:   3'- -CGCUCU-UACGGCuGUGCcg------UGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 50678 0.66 0.641371
Target:  5'- cGCGucGGUGCCGACGaGGCGCU-GCu -3'
miRNA:   3'- -CGCucUUACGGCUGUgCCGUGGcCGu -5'
23199 5' -57.4 NC_005259.1 + 51334 0.78 0.14201
Target:  5'- aCGAGGAUGCCGGugaGCucggauaugcccgguGGCACCGGCAc -3'
miRNA:   3'- cGCUCUUACGGCUg--UG---------------CCGUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 52558 0.68 0.534766
Target:  5'- uGCGAGc---CCGACAUGGUcgaccggACCGGCc -3'
miRNA:   3'- -CGCUCuuacGGCUGUGCCG-------UGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 54689 0.66 0.662662
Target:  5'- aGCGAGAccGUGUCGAgGCGGguggccucaGCCuGGUAc -3'
miRNA:   3'- -CGCUCU--UACGGCUgUGCCg--------UGG-CCGU- -5'
23199 5' -57.4 NC_005259.1 + 57297 0.68 0.56706
Target:  5'- uCGu-AGUGCaCGACAuCGaGCACCGGCGg -3'
miRNA:   3'- cGCucUUACG-GCUGU-GC-CGUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 57446 0.68 0.522436
Target:  5'- gGCGAGGuugGUG-CGACGCugcggcaggccgguGGCACCGGaCAc -3'
miRNA:   3'- -CGCUCU---UACgGCUGUG--------------CCGUGGCC-GU- -5'
23199 5' -57.4 NC_005259.1 + 58727 0.81 0.093366
Target:  5'- cCGGGggUGUCGuugGCAcCGGCACCGGCGa -3'
miRNA:   3'- cGCUCuuACGGC---UGU-GCCGUGGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.