miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23199 5' -57.4 NC_005259.1 + 27997 0.68 0.515295
Target:  5'- gGUGcGggUGCCGGgGCGGgguCGCCGGgGu -3'
miRNA:   3'- -CGCuCuuACGGCUgUGCC---GUGGCCgU- -5'
23199 5' -57.4 NC_005259.1 + 57446 0.68 0.522436
Target:  5'- gGCGAGGuugGUG-CGACGCugcggcaggccgguGGCACCGGaCAc -3'
miRNA:   3'- -CGCUCU---UACgGCUGUG--------------CCGUGGCC-GU- -5'
23199 5' -57.4 NC_005259.1 + 67218 0.68 0.525509
Target:  5'- gGCGGGGucgAUGCCGAcCACGGCGgUGuaGg -3'
miRNA:   3'- -CGCUCU---UACGGCU-GUGCCGUgGCcgU- -5'
23199 5' -57.4 NC_005259.1 + 59291 0.68 0.525509
Target:  5'- uGUGcAGAccuacgcUGUCGugGCGGCAgCGGCGa -3'
miRNA:   3'- -CGC-UCUu------ACGGCugUGCCGUgGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 59402 0.68 0.525509
Target:  5'- cGCGAGcGUGaCCucgcGCAUGGCGUCGGCGg -3'
miRNA:   3'- -CGCUCuUAC-GGc---UGUGCCGUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 52558 0.68 0.534766
Target:  5'- uGCGAGc---CCGACAUGGUcgaccggACCGGCc -3'
miRNA:   3'- -CGCUCuuacGGCUGUGCCG-------UGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 45119 0.68 0.546158
Target:  5'- cCGAGAgugGUGCCGACGaGGU--CGGCAa -3'
miRNA:   3'- cGCUCU---UACGGCUGUgCCGugGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 32991 0.68 0.546158
Target:  5'- cCGAGggUGCCGcCAcgcccgauguCGGCAccacagcccauCCGGCu -3'
miRNA:   3'- cGCUCuuACGGCuGU----------GCCGU-----------GGCCGu -5'
23199 5' -57.4 NC_005259.1 + 29933 0.68 0.556581
Target:  5'- cGCGuGGccGCC-ACGCGGC-CCGGUc -3'
miRNA:   3'- -CGCuCUuaCGGcUGUGCCGuGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 57297 0.68 0.56706
Target:  5'- uCGu-AGUGCaCGACAuCGaGCACCGGCGg -3'
miRNA:   3'- cGCucUUACG-GCUGU-GC-CGUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 30745 0.67 0.576534
Target:  5'- cUGAGAguucaugaacugcAUGCCGACGCcgguGGCACCGcuGCc -3'
miRNA:   3'- cGCUCU-------------UACGGCUGUG----CCGUGGC--CGu -5'
23199 5' -57.4 NC_005259.1 + 33105 0.67 0.598765
Target:  5'- cGCGAGcGUGCCuguagggccACGCGGCagccGCCGcGCGu -3'
miRNA:   3'- -CGCUCuUACGGc--------UGUGCCG----UGGC-CGU- -5'
23199 5' -57.4 NC_005259.1 + 4263 0.66 0.641371
Target:  5'- uGCGAGGAcaacgggcgGCUGcgcugccacgaGCACGG-ACCGGCGg -3'
miRNA:   3'- -CGCUCUUa--------CGGC-----------UGUGCCgUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 38441 0.66 0.641371
Target:  5'- uCGAGAccgaaaAUGCCGuGCGagGGCACCgagGGCAg -3'
miRNA:   3'- cGCUCU------UACGGC-UGUg-CCGUGG---CCGU- -5'
23199 5' -57.4 NC_005259.1 + 50678 0.66 0.641371
Target:  5'- cGCGucGGUGCCGACGaGGCGCU-GCu -3'
miRNA:   3'- -CGCucUUACGGCUGUgCCGUGGcCGu -5'
23199 5' -57.4 NC_005259.1 + 54689 0.66 0.662662
Target:  5'- aGCGAGAccGUGUCGAgGCGGguggccucaGCCuGGUAc -3'
miRNA:   3'- -CGCUCU--UACGGCUgUGCCg--------UGG-CCGU- -5'
23199 5' -57.4 NC_005259.1 + 28967 0.66 0.662662
Target:  5'- cCGAGGucgGUGCCGAggcCGCGaGCGCCcGCu -3'
miRNA:   3'- cGCUCU---UACGGCU---GUGC-CGUGGcCGu -5'
23199 5' -57.4 NC_005259.1 + 8076 0.66 0.662662
Target:  5'- uCGAGAucGUGCCG-CGCuGGCgugACCGuGCGa -3'
miRNA:   3'- cGCUCU--UACGGCuGUG-CCG---UGGC-CGU- -5'
23199 5' -57.4 NC_005259.1 + 24083 0.66 0.66691
Target:  5'- cGCGAGAucaCCGGCAgGGCcaacgaaccgaugggACCGGgCGg -3'
miRNA:   3'- -CGCUCUuacGGCUGUgCCG---------------UGGCC-GU- -5'
23199 5' -57.4 NC_005259.1 + 13813 0.66 0.670092
Target:  5'- gGCGAGcaccacgugugcguGAUGaCCGACG-GGCAcauugcCCGGCGa -3'
miRNA:   3'- -CGCUC--------------UUAC-GGCUGUgCCGU------GGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.