Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 40067 | 0.69 | 0.465545 |
Target: 5'- cGCGAuGAcccauggGCCGACGC-GCACCGaGCGc -3' miRNA: 3'- -CGCU-CUua-----CGGCUGUGcCGUGGC-CGU- -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 38441 | 0.66 | 0.641371 |
Target: 5'- uCGAGAccgaaaAUGCCGuGCGagGGCACCgagGGCAg -3' miRNA: 3'- cGCUCU------UACGGC-UGUg-CCGUGG---CCGU- -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 37185 | 0.69 | 0.486152 |
Target: 5'- cGCGAGGAcgagcugcggcccuUGCCGcCACcgccgccgccgccggGGCGCUGGCc -3' miRNA: 3'- -CGCUCUU--------------ACGGCuGUG---------------CCGUGGCCGu -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 35703 | 0.66 | 0.672212 |
Target: 5'- gGCGAGGGgucGCUGACGaGGUAuccgcccgacgacCCGGCGc -3' miRNA: 3'- -CGCUCUUa--CGGCUGUgCCGU-------------GGCCGU- -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 35657 | 0.7 | 0.427604 |
Target: 5'- gGCGAGggUgGCCaGCGCGGUGgUGGUg -3' miRNA: 3'- -CGCUCuuA-CGGcUGUGCCGUgGCCGu -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 33105 | 0.67 | 0.598765 |
Target: 5'- cGCGAGcGUGCCuguagggccACGCGGCagccGCCGcGCGu -3' miRNA: 3'- -CGCUCuUACGGc--------UGUGCCG----UGGC-CGU- -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 32991 | 0.68 | 0.546158 |
Target: 5'- cCGAGggUGCCGcCAcgcccgauguCGGCAccacagcccauCCGGCu -3' miRNA: 3'- cGCUCuuACGGCuGU----------GCCGU-----------GGCCGu -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 30745 | 0.67 | 0.576534 |
Target: 5'- cUGAGAguucaugaacugcAUGCCGACGCcgguGGCACCGcuGCc -3' miRNA: 3'- cGCUCU-------------UACGGCUGUG----CCGUGGC--CGu -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 29933 | 0.68 | 0.556581 |
Target: 5'- cGCGuGGccGCC-ACGCGGC-CCGGUc -3' miRNA: 3'- -CGCuCUuaCGGcUGUGCCGuGGCCGu -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 29051 | 0.72 | 0.325661 |
Target: 5'- aCGAGA--GCCGcgaGCGCGGUAUCGGCc -3' miRNA: 3'- cGCUCUuaCGGC---UGUGCCGUGGCCGu -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 28967 | 0.66 | 0.662662 |
Target: 5'- cCGAGGucgGUGCCGAggcCGCGaGCGCCcGCu -3' miRNA: 3'- cGCUCU---UACGGCU---GUGC-CGUGGcCGu -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 28760 | 0.7 | 0.44635 |
Target: 5'- cGUGAGAucgucgccgGUGCCGACGaGGUacccGCCGGUc -3' miRNA: 3'- -CGCUCU---------UACGGCUGUgCCG----UGGCCGu -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 27997 | 0.68 | 0.515295 |
Target: 5'- gGUGcGggUGCCGGgGCGGgguCGCCGGgGu -3' miRNA: 3'- -CGCuCuuACGGCUgUGCC---GUGGCCgU- -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 27365 | 0.75 | 0.230948 |
Target: 5'- uCGGGcuuGGUGcCCGGCACGGUgACCGGCGg -3' miRNA: 3'- cGCUC---UUAC-GGCUGUGCCG-UGGCCGU- -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 26826 | 0.69 | 0.485161 |
Target: 5'- gGCGGuGGUGCCGGgGCGGUcuGCUcgGGCAg -3' miRNA: 3'- -CGCUcUUACGGCUgUGCCG--UGG--CCGU- -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 24083 | 0.66 | 0.66691 |
Target: 5'- cGCGAGAucaCCGGCAgGGCcaacgaaccgaugggACCGGgCGg -3' miRNA: 3'- -CGCUCUuacGGCUGUgCCG---------------UGGCC-GU- -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 21971 | 0.77 | 0.156342 |
Target: 5'- cGCGuGggUGUCGuucucccCAcCGGCACCGGCAa -3' miRNA: 3'- -CGCuCuuACGGCu------GU-GCCGUGGCCGU- -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 17757 | 0.66 | 0.694373 |
Target: 5'- cGUGAGGccGCCG-CGCGccgggccgagcGCACCGaGCGu -3' miRNA: 3'- -CGCUCUuaCGGCuGUGC-----------CGUGGC-CGU- -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 13813 | 0.66 | 0.670092 |
Target: 5'- gGCGAGcaccacgugugcguGAUGaCCGACG-GGCAcauugcCCGGCGa -3' miRNA: 3'- -CGCUC--------------UUAC-GGCUGUgCCGU------GGCCGU- -5' |
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23199 | 5' | -57.4 | NC_005259.1 | + | 13448 | 0.79 | 0.113137 |
Target: 5'- gGCGuGAccGUCGGCGCGGCGCUGGUg -3' miRNA: 3'- -CGCuCUuaCGGCUGUGCCGUGGCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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