miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23200 5' -54.1 NC_005259.1 + 66931 0.74 0.406049
Target:  5'- uGCUCGaccggggugagcGGGACACCGGCGaGcUGUuucuugcGCGCCu -3'
miRNA:   3'- -UGAGU------------UCCUGUGGCUGC-C-ACA-------UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 66840 0.66 0.833669
Target:  5'- gGCUCAugccgcccgcacGGGcCACCGAuCGGccuUGUucgcaccGCGCCa -3'
miRNA:   3'- -UGAGU------------UCCuGUGGCU-GCC---ACA-------UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 65401 0.68 0.717381
Target:  5'- --aCAAGGACACCGucaugcucACGGUG---GCCa -3'
miRNA:   3'- ugaGUUCCUGUGGC--------UGCCACaugCGG- -5'
23200 5' -54.1 NC_005259.1 + 64603 0.69 0.674789
Target:  5'- --aCGAGGugACUGACGGcGaGCGCg -3'
miRNA:   3'- ugaGUUCCugUGGCUGCCaCaUGCGg -5'
23200 5' -54.1 NC_005259.1 + 64234 0.68 0.748505
Target:  5'- -aUCGGGGucgauaGCCGACGGgaucaacgugGUGCGCg -3'
miRNA:   3'- ugAGUUCCug----UGGCUGCCa---------CAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 63651 0.68 0.717381
Target:  5'- uGCUCGcuggccGGGACGCCGGacaccuCGGgcaccgGcGCGCCg -3'
miRNA:   3'- -UGAGU------UCCUGUGGCU------GCCa-----CaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 63552 0.66 0.825682
Target:  5'- uGCUCGGcGGcCACCGacgcgacgaGCGGgauaUACGCCg -3'
miRNA:   3'- -UGAGUU-CCuGUGGC---------UGCCac--AUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 63182 0.7 0.620741
Target:  5'- cGC-CGAGGugAUCGcacccCGGUcGUGCGCCu -3'
miRNA:   3'- -UGaGUUCCugUGGCu----GCCA-CAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 62732 0.68 0.7687
Target:  5'- cGCUCGAccGgACCGGCGGcaGUACGCg -3'
miRNA:   3'- -UGAGUUccUgUGGCUGCCa-CAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 61992 0.77 0.271499
Target:  5'- uGCUCugcaccauGGGCACCGuGCGGUGUAC-CCg -3'
miRNA:   3'- -UGAGuu------CCUGUGGC-UGCCACAUGcGG- -5'
23200 5' -54.1 NC_005259.1 + 61215 0.7 0.631569
Target:  5'- -aUCGcAGGAag-CGGCGGUGUGCGCa -3'
miRNA:   3'- ugAGU-UCCUgugGCUGCCACAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 61155 1.12 0.001287
Target:  5'- gACUCAAGGACACCGACGGUGUACGCCu -3'
miRNA:   3'- -UGAGUUCCUGUGGCUGCCACAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 60421 0.66 0.851648
Target:  5'- uGCUCgGGGGugGCCcACGGggcgGccACGCCc -3'
miRNA:   3'- -UGAG-UUCCugUGGcUGCCa---Ca-UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 57311 0.7 0.649973
Target:  5'- -aUCGA--GCACCGGCGGUGUcgguguggucauguGCGCUg -3'
miRNA:   3'- ugAGUUccUGUGGCUGCCACA--------------UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 56698 0.72 0.524732
Target:  5'- gGCUgCGAGGugGCCacGAUGGUGUccccgagcGCGUCg -3'
miRNA:   3'- -UGA-GUUCCugUGG--CUGCCACA--------UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 56652 0.74 0.406961
Target:  5'- aGCaUCGAGGGCACCGcgcgucACGGgcucguUGCGCCa -3'
miRNA:   3'- -UG-AGUUCCUGUGGC------UGCCac----AUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 56210 0.74 0.425457
Target:  5'- uGCUCAAGGAU-----CGGUGUAUGCCa -3'
miRNA:   3'- -UGAGUUCCUGuggcuGCCACAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 56094 0.68 0.747482
Target:  5'- uGCUCGucGGGGcCACCGcguggccaccgaaACuGUGUGCGCUg -3'
miRNA:   3'- -UGAGU--UCCU-GUGGC-------------UGcCACAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 53009 0.7 0.653217
Target:  5'- cCUCGAcuGGGCGCUG-CGGUG-GCGUCg -3'
miRNA:   3'- uGAGUU--CCUGUGGCuGCCACaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 52334 0.66 0.851648
Target:  5'- gGCUC--GGACA-CGcCGGUGUGcCGCUg -3'
miRNA:   3'- -UGAGuuCCUGUgGCuGCCACAU-GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.