miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23202 5' -62.8 NC_005259.1 + 68803 0.66 0.414006
Target:  5'- gGCGgugUCGGUGCCCGGUACaugcucucggucaaaGCaGUCGGUGa -3'
miRNA:   3'- -CGU---GGUCGCGGGUCGUG---------------CG-CGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 42542 0.66 0.410487
Target:  5'- gGCACCgagguggcgGGCaGCUCGGCGaGCaGCCGGUc -3'
miRNA:   3'- -CGUGG---------UCG-CGGGUCGUgCG-CGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 35460 0.66 0.410487
Target:  5'- cCACCGGCaccgCCAGCAcCGC-CCGGUa -3'
miRNA:   3'- cGUGGUCGcg--GGUCGU-GCGcGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 49456 0.66 0.410487
Target:  5'- gGCAgCCGGaUGCCCAGCAgGuCGCCcuUGa -3'
miRNA:   3'- -CGU-GGUC-GCGGGUCGUgC-GCGGccAC- -5'
23202 5' -62.8 NC_005259.1 + 4652 0.66 0.410487
Target:  5'- cGCACC-GCGCCU---ACGgGCaCGGUGu -3'
miRNA:   3'- -CGUGGuCGCGGGucgUGCgCG-GCCAC- -5'
23202 5' -62.8 NC_005259.1 + 11011 0.66 0.401774
Target:  5'- cGCGCCGgacGCGCCgaGGCAgGaguuCGCCgGGUGg -3'
miRNA:   3'- -CGUGGU---CGCGGg-UCGUgC----GCGG-CCAC- -5'
23202 5' -62.8 NC_005259.1 + 38913 0.66 0.401774
Target:  5'- uCAUCAGCGCUUgAGCACGUcgguguugcuguGCCcGGUGc -3'
miRNA:   3'- cGUGGUCGCGGG-UCGUGCG------------CGG-CCAC- -5'
23202 5' -62.8 NC_005259.1 + 17904 0.66 0.401774
Target:  5'- cGCGCCgaugcguguGGaUGCCCGGUcuggacCGCGCCcGGUGu -3'
miRNA:   3'- -CGUGG---------UC-GCGGGUCGu-----GCGCGG-CCAC- -5'
23202 5' -62.8 NC_005259.1 + 53222 0.66 0.401774
Target:  5'- uCGCCcGCGCCCuGCuugagguuCGCGCCGc-- -3'
miRNA:   3'- cGUGGuCGCGGGuCGu-------GCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 51034 0.66 0.401774
Target:  5'- -gACgAGCGgCgGGCACGCGCCa--- -3'
miRNA:   3'- cgUGgUCGCgGgUCGUGCGCGGccac -5'
23202 5' -62.8 NC_005259.1 + 59913 0.66 0.39318
Target:  5'- -gACaCAGUGCCCcguccauaccaAGCACGCGCCc--- -3'
miRNA:   3'- cgUG-GUCGCGGG-----------UCGUGCGCGGccac -5'
23202 5' -62.8 NC_005259.1 + 39310 0.66 0.39318
Target:  5'- uGCACgA-CGCCCGcugucGCGC-CGCUGGUGa -3'
miRNA:   3'- -CGUGgUcGCGGGU-----CGUGcGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 10127 0.66 0.39318
Target:  5'- cGCAUCA--GCCCAcGCGCGCGCCc--- -3'
miRNA:   3'- -CGUGGUcgCGGGU-CGUGCGCGGccac -5'
23202 5' -62.8 NC_005259.1 + 47269 0.66 0.39318
Target:  5'- cGCGuuCCAGCGCaCCgAGCAgaccgcCGuCGCCGGa- -3'
miRNA:   3'- -CGU--GGUCGCG-GG-UCGU------GC-GCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 49422 0.66 0.384705
Target:  5'- -uGCCAGCGagaaaCCGGCGaGCGCCGc-- -3'
miRNA:   3'- cgUGGUCGCg----GGUCGUgCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 45733 0.66 0.384705
Target:  5'- cGCACCAccgaggccGCGCaCCgccucggggaugAGCACGCccucGCCGGg- -3'
miRNA:   3'- -CGUGGU--------CGCG-GG------------UCGUGCG----CGGCCac -5'
23202 5' -62.8 NC_005259.1 + 20246 0.66 0.384705
Target:  5'- cGCACCcuGUGCgaCAcGC-CGCGCCGGg- -3'
miRNA:   3'- -CGUGGu-CGCGg-GU-CGuGCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 31484 0.66 0.384705
Target:  5'- uGC-CCuGCGaCCaCAGCAgggucucacCGCGCCGGa- -3'
miRNA:   3'- -CGuGGuCGC-GG-GUCGU---------GCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 18723 0.66 0.376353
Target:  5'- uCAUCGGgcCGCCCGGCAUcgguaaGuCGUCGGUGg -3'
miRNA:   3'- cGUGGUC--GCGGGUCGUG------C-GCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 68408 0.66 0.376353
Target:  5'- cCACCAacguagaccuuGaCGCCUcGCGCGgGCCGGUu -3'
miRNA:   3'- cGUGGU-----------C-GCGGGuCGUGCgCGGCCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.