miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23202 5' -62.8 NC_005259.1 + 49422 0.66 0.384705
Target:  5'- -uGCCAGCGagaaaCCGGCGaGCGCCGc-- -3'
miRNA:   3'- cgUGGUCGCg----GGUCGUgCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 42542 0.66 0.410487
Target:  5'- gGCACCgagguggcgGGCaGCUCGGCGaGCaGCCGGUc -3'
miRNA:   3'- -CGUGG---------UCG-CGGGUCGUgCG-CGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 68870 0.67 0.324361
Target:  5'- -uGCCcGCGCCgGGCGCGCcgaugagguagaugaGgCGGUGg -3'
miRNA:   3'- cgUGGuCGCGGgUCGUGCG---------------CgGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 41057 0.67 0.314043
Target:  5'- uCACCGaguGCGCCCAcggcucgauGuCACGCaGCCGGUc -3'
miRNA:   3'- cGUGGU---CGCGGGU---------C-GUGCG-CGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 21891 0.67 0.321387
Target:  5'- uCACCAGCGCCuCGGgAauUGCGCCcGUa -3'
miRNA:   3'- cGUGGUCGCGG-GUCgU--GCGCGGcCAc -5'
23202 5' -62.8 NC_005259.1 + 56901 0.67 0.321387
Target:  5'- cGCAgCguGGcCGCCgCAGCAggcgugccCGCGUCGGUGa -3'
miRNA:   3'- -CGUgG--UC-GCGG-GUCGU--------GCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 41405 0.67 0.352039
Target:  5'- cGCGCCgcucggGGUGCCCAcgauguGCACGgGCCGc-- -3'
miRNA:   3'- -CGUGG------UCGCGGGU------CGUGCgCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 4531 0.67 0.328859
Target:  5'- gGCACCccggucgauuGUGCCCAGUGCGgGCacgaGGUc -3'
miRNA:   3'- -CGUGGu---------CGCGGGUCGUGCgCGg---CCAc -5'
23202 5' -62.8 NC_005259.1 + 8574 0.67 0.360018
Target:  5'- aGCACCGccacCGCCCAcGCACGauCCGGc- -3'
miRNA:   3'- -CGUGGUc---GCGGGU-CGUGCgcGGCCac -5'
23202 5' -62.8 NC_005259.1 + 5471 0.67 0.352831
Target:  5'- aGCACCaauggccggugcaauAGCGCCgAGCgaggaucgagcuacGCGCGCCGc-- -3'
miRNA:   3'- -CGUGG---------------UCGCGGgUCG--------------UGCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 61943 0.67 0.351248
Target:  5'- cGCGCgGGUGCCgGGgccaccgcagccuCACGCGCCGcUGc -3'
miRNA:   3'- -CGUGgUCGCGGgUC-------------GUGCGCGGCcAC- -5'
23202 5' -62.8 NC_005259.1 + 44777 0.67 0.328859
Target:  5'- cGCAUCGGCGgucgagaaCAGaCGCuCGCCGGUGg -3'
miRNA:   3'- -CGUGGUCGCgg------GUC-GUGcGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 9631 0.67 0.341079
Target:  5'- cGCGCCGGUGCCCucgaucaccuCGuCGUCGGUa -3'
miRNA:   3'- -CGUGGUCGCGGGucgu------GC-GCGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 19851 0.67 0.344185
Target:  5'- cGCGCUcgguguGGCGCUC-GCGCcCGCCGGg- -3'
miRNA:   3'- -CGUGG------UCGCGGGuCGUGcGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 52164 0.68 0.299036
Target:  5'- aGCGCCgaGGCGCUCAuGCAgcaggacCGCGCCGa-- -3'
miRNA:   3'- -CGUGG--UCGCGGGU-CGU-------GCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 17770 0.68 0.297636
Target:  5'- cGCGCCGG-GCCgAGCgcaccgagcguGCGCaccgcgauagcgagGCCGGUGa -3'
miRNA:   3'- -CGUGGUCgCGGgUCG-----------UGCG--------------CGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 52601 0.68 0.28866
Target:  5'- aGCACCAGCGCCguaCGGUggccaacuacgucgaGCuGCGUCGGcUGu -3'
miRNA:   3'- -CGUGGUCGCGG---GUCG---------------UG-CGCGGCC-AC- -5'
23202 5' -62.8 NC_005259.1 + 36864 0.68 0.279233
Target:  5'- uGCGCCguugcuGGCaccGCCCGcGCcgACGaCGCCGGUGa -3'
miRNA:   3'- -CGUGG------UCG---CGGGU-CG--UGC-GCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 36995 0.68 0.279233
Target:  5'- cGCACCGuucuUGCCCGcGCGCcCGCCGGg- -3'
miRNA:   3'- -CGUGGUc---GCGGGU-CGUGcGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 735 0.68 0.272651
Target:  5'- aCACCGGCgguGCCUA-CGC-CGCCGGUGc -3'
miRNA:   3'- cGUGGUCG---CGGGUcGUGcGCGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.