Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23202 | 5' | -62.8 | NC_005259.1 | + | 50387 | 0.7 | 0.223864 |
Target: 5'- gGC-CCAcGUGUCgCGGCucgccgaGCGCGCCGGUGc -3' miRNA: 3'- -CGuGGU-CGCGG-GUCG-------UGCGCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 36242 | 0.7 | 0.224419 |
Target: 5'- aGCGCgAGCGCCugcgucggCAGCGCcaCGCCGGa- -3' miRNA: 3'- -CGUGgUCGCGG--------GUCGUGc-GCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 44154 | 0.7 | 0.224419 |
Target: 5'- -aACguGCgGUCgAGCAgCGCGCCGGUGu -3' miRNA: 3'- cgUGguCG-CGGgUCGU-GCGCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 35252 | 0.69 | 0.235753 |
Target: 5'- cGCACuCGcguuguucGCGCCC-GC-CGCGCCGGg- -3' miRNA: 3'- -CGUG-GU--------CGCGGGuCGuGCGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 27357 | 0.69 | 0.241599 |
Target: 5'- cGUACUgaucgggcuuGGUGCCCGGCACggugaccgGCGgCGGUGu -3' miRNA: 3'- -CGUGG----------UCGCGGGUCGUG--------CGCgGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 28770 | 0.69 | 0.241599 |
Target: 5'- uCGCCGGUGCCgacgaGGUACcCGCCGGUc -3' miRNA: 3'- cGUGGUCGCGGg----UCGUGcGCGGCCAc -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 37224 | 0.69 | 0.253651 |
Target: 5'- cCGCCGGgGCgCUGGCcCGUGCCGGa- -3' miRNA: 3'- cGUGGUCgCG-GGUCGuGCGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 26435 | 0.69 | 0.259861 |
Target: 5'- cGCACC---GCCgAGCggGCGgGCCGGUGg -3' miRNA: 3'- -CGUGGucgCGGgUCG--UGCgCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 52131 | 0.69 | 0.259861 |
Target: 5'- cGCACCGcCGUCCGGCACcuCGCCGa-- -3' miRNA: 3'- -CGUGGUcGCGGGUCGUGc-GCGGCcac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 60272 | 0.69 | 0.259861 |
Target: 5'- cCACCAGCGCUgccgggCGGCcauCGuCGUCGGUGc -3' miRNA: 3'- cGUGGUCGCGG------GUCGu--GC-GCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 46765 | 0.69 | 0.266194 |
Target: 5'- aCACCuGCGCCgaCAGcCGCGCccGCCGGg- -3' miRNA: 3'- cGUGGuCGCGG--GUC-GUGCG--CGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 735 | 0.68 | 0.272651 |
Target: 5'- aCACCGGCgguGCCUA-CGC-CGCCGGUGc -3' miRNA: 3'- cGUGGUCG---CGGGUcGUGcGCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 36995 | 0.68 | 0.279233 |
Target: 5'- cGCACCGuucuUGCCCGcGCGCcCGCCGGg- -3' miRNA: 3'- -CGUGGUc---GCGGGU-CGUGcGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 36864 | 0.68 | 0.279233 |
Target: 5'- uGCGCCguugcuGGCaccGCCCGcGCcgACGaCGCCGGUGa -3' miRNA: 3'- -CGUGG------UCG---CGGGU-CG--UGC-GCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 52601 | 0.68 | 0.28866 |
Target: 5'- aGCACCAGCGCCguaCGGUggccaacuacgucgaGCuGCGUCGGcUGu -3' miRNA: 3'- -CGUGGUCGCGG---GUCG---------------UG-CGCGGCC-AC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 17770 | 0.68 | 0.297636 |
Target: 5'- cGCGCCGG-GCCgAGCgcaccgagcguGCGCaccgcgauagcgagGCCGGUGa -3' miRNA: 3'- -CGUGGUCgCGGgUCG-----------UGCG--------------CGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 52164 | 0.68 | 0.299036 |
Target: 5'- aGCGCCgaGGCGCUCAuGCAgcaggacCGCGCCGa-- -3' miRNA: 3'- -CGUGG--UCGCGGGU-CGU-------GCGCGGCcac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 41057 | 0.67 | 0.314043 |
Target: 5'- uCACCGaguGCGCCCAcggcucgauGuCACGCaGCCGGUc -3' miRNA: 3'- cGUGGU---CGCGGGU---------C-GUGCG-CGGCCAc -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 21891 | 0.67 | 0.321387 |
Target: 5'- uCACCAGCGCCuCGGgAauUGCGCCcGUa -3' miRNA: 3'- cGUGGUCGCGG-GUCgU--GCGCGGcCAc -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 56901 | 0.67 | 0.321387 |
Target: 5'- cGCAgCguGGcCGCCgCAGCAggcgugccCGCGUCGGUGa -3' miRNA: 3'- -CGUgG--UC-GCGG-GUCGU--------GCGCGGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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