miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23202 5' -62.8 NC_005259.1 + 68870 0.67 0.324361
Target:  5'- -uGCCcGCGCCgGGCGCGCcgaugagguagaugaGgCGGUGg -3'
miRNA:   3'- cgUGGuCGCGGgUCGUGCG---------------CgGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 4531 0.67 0.328859
Target:  5'- gGCACCccggucgauuGUGCCCAGUGCGgGCacgaGGUc -3'
miRNA:   3'- -CGUGGu---------CGCGGGUCGUGCgCGg---CCAc -5'
23202 5' -62.8 NC_005259.1 + 44777 0.67 0.328859
Target:  5'- cGCAUCGGCGgucgagaaCAGaCGCuCGCCGGUGg -3'
miRNA:   3'- -CGUGGUCGCgg------GUC-GUGcGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 9631 0.67 0.341079
Target:  5'- cGCGCCGGUGCCCucgaucaccuCGuCGUCGGUa -3'
miRNA:   3'- -CGUGGUCGCGGGucgu------GC-GCGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 19851 0.67 0.344185
Target:  5'- cGCGCUcgguguGGCGCUC-GCGCcCGCCGGg- -3'
miRNA:   3'- -CGUGG------UCGCGGGuCGUGcGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 61943 0.67 0.351248
Target:  5'- cGCGCgGGUGCCgGGgccaccgcagccuCACGCGCCGcUGc -3'
miRNA:   3'- -CGUGgUCGCGGgUC-------------GUGCGCGGCcAC- -5'
23202 5' -62.8 NC_005259.1 + 41405 0.67 0.352039
Target:  5'- cGCGCCgcucggGGUGCCCAcgauguGCACGgGCCGc-- -3'
miRNA:   3'- -CGUGG------UCGCGGGU------CGUGCgCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 5471 0.67 0.352831
Target:  5'- aGCACCaauggccggugcaauAGCGCCgAGCgaggaucgagcuacGCGCGCCGc-- -3'
miRNA:   3'- -CGUGG---------------UCGCGGgUCG--------------UGCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 8574 0.67 0.360018
Target:  5'- aGCACCGccacCGCCCAcGCACGauCCGGc- -3'
miRNA:   3'- -CGUGGUc---GCGGGU-CGUGCgcGGCCac -5'
23202 5' -62.8 NC_005259.1 + 53787 0.66 0.368123
Target:  5'- -gACCGGC-CUgAGCuCGUGUCGGUGa -3'
miRNA:   3'- cgUGGUCGcGGgUCGuGCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 18852 0.66 0.375524
Target:  5'- uCGCCGGUGCCguGCaacgguuGCGCGCgUGGg- -3'
miRNA:   3'- cGUGGUCGCGGguCG-------UGCGCG-GCCac -5'
23202 5' -62.8 NC_005259.1 + 18723 0.66 0.376353
Target:  5'- uCAUCGGgcCGCCCGGCAUcgguaaGuCGUCGGUGg -3'
miRNA:   3'- cGUGGUC--GCGGGUCGUG------C-GCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 68408 0.66 0.376353
Target:  5'- cCACCAacguagaccuuGaCGCCUcGCGCGgGCCGGUu -3'
miRNA:   3'- cGUGGU-----------C-GCGGGuCGUGCgCGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 31484 0.66 0.384705
Target:  5'- uGC-CCuGCGaCCaCAGCAgggucucacCGCGCCGGa- -3'
miRNA:   3'- -CGuGGuCGC-GG-GUCGU---------GCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 20246 0.66 0.384705
Target:  5'- cGCACCcuGUGCgaCAcGC-CGCGCCGGg- -3'
miRNA:   3'- -CGUGGu-CGCGg-GU-CGuGCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 49422 0.66 0.384705
Target:  5'- -uGCCAGCGagaaaCCGGCGaGCGCCGc-- -3'
miRNA:   3'- cgUGGUCGCg----GGUCGUgCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 45733 0.66 0.384705
Target:  5'- cGCACCAccgaggccGCGCaCCgccucggggaugAGCACGCccucGCCGGg- -3'
miRNA:   3'- -CGUGGU--------CGCG-GG------------UCGUGCG----CGGCCac -5'
23202 5' -62.8 NC_005259.1 + 39310 0.66 0.39318
Target:  5'- uGCACgA-CGCCCGcugucGCGC-CGCUGGUGa -3'
miRNA:   3'- -CGUGgUcGCGGGU-----CGUGcGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 10127 0.66 0.39318
Target:  5'- cGCAUCA--GCCCAcGCGCGCGCCc--- -3'
miRNA:   3'- -CGUGGUcgCGGGU-CGUGCGCGGccac -5'
23202 5' -62.8 NC_005259.1 + 47269 0.66 0.39318
Target:  5'- cGCGuuCCAGCGCaCCgAGCAgaccgcCGuCGCCGGa- -3'
miRNA:   3'- -CGU--GGUCGCG-GG-UCGU------GC-GCGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.