miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23202 5' -62.8 NC_005259.1 + 6443 0.74 0.11813
Target:  5'- gGCACCGucGCGCUgauCGGCAgCGuCGCCGGUGc -3'
miRNA:   3'- -CGUGGU--CGCGG---GUCGU-GC-GCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 48451 0.74 0.112038
Target:  5'- aGCGgCAGCGCguuCCAcCGCGCGCCGGg- -3'
miRNA:   3'- -CGUgGUCGCG---GGUcGUGCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 20659 0.75 0.102627
Target:  5'- gGCACCGGggccgaggaCGCCaugauguggucgcaCGGCACGCGCuCGGUGg -3'
miRNA:   3'- -CGUGGUC---------GCGG--------------GUCGUGCGCG-GCCAC- -5'
23202 5' -62.8 NC_005259.1 + 2216 0.78 0.053601
Target:  5'- cGCACCgAGCGCCCGGCcucgccauuugucgGCGacaGCCGGUa -3'
miRNA:   3'- -CGUGG-UCGCGGGUCG--------------UGCg--CGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 45627 0.79 0.048429
Target:  5'- cCGCCGG-GCCgGGCAgCGCGCCGGUGc -3'
miRNA:   3'- cGUGGUCgCGGgUCGU-GCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 29940 0.71 0.179017
Target:  5'- cCGCCAcGCgGCCCGGuCGCG-GCUGGUGg -3'
miRNA:   3'- cGUGGU-CG-CGGGUC-GUGCgCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 13441 0.71 0.183628
Target:  5'- cGCGCUAgGCGUgaccgUCGGCGCgGCGCUGGUGc -3'
miRNA:   3'- -CGUGGU-CGCG-----GGUCGUG-CGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 52131 0.69 0.259861
Target:  5'- cGCACCGcCGUCCGGCACcuCGCCGa-- -3'
miRNA:   3'- -CGUGGUcGCGGGUCGUGc-GCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 26435 0.69 0.259861
Target:  5'- cGCACC---GCCgAGCggGCGgGCCGGUGg -3'
miRNA:   3'- -CGUGGucgCGGgUCG--UGCgCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 37224 0.69 0.253651
Target:  5'- cCGCCGGgGCgCUGGCcCGUGCCGGa- -3'
miRNA:   3'- cGUGGUCgCG-GGUCGuGCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 28770 0.69 0.241599
Target:  5'- uCGCCGGUGCCgacgaGGUACcCGCCGGUc -3'
miRNA:   3'- cGUGGUCGCGGg----UCGUGcGCGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 27357 0.69 0.241599
Target:  5'- cGUACUgaucgggcuuGGUGCCCGGCACggugaccgGCGgCGGUGu -3'
miRNA:   3'- -CGUGG----------UCGCGGGUCGUG--------CGCgGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 35252 0.69 0.235753
Target:  5'- cGCACuCGcguuguucGCGCCC-GC-CGCGCCGGg- -3'
miRNA:   3'- -CGUG-GU--------CGCGGGuCGuGCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 44154 0.7 0.224419
Target:  5'- -aACguGCgGUCgAGCAgCGCGCCGGUGu -3'
miRNA:   3'- cgUGguCG-CGGgUCGU-GCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 36242 0.7 0.224419
Target:  5'- aGCGCgAGCGCCugcgucggCAGCGCcaCGCCGGa- -3'
miRNA:   3'- -CGUGgUCGCGG--------GUCGUGc-GCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 50387 0.7 0.223864
Target:  5'- gGC-CCAcGUGUCgCGGCucgccgaGCGCGCCGGUGc -3'
miRNA:   3'- -CGuGGU-CGCGG-GUCG-------UGCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 25947 0.7 0.21355
Target:  5'- aCGCCGGUGCCCGGC-C-CGCCGa-- -3'
miRNA:   3'- cGUGGUCGCGGGUCGuGcGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 55872 0.7 0.211959
Target:  5'- uCGCCgAGCGCCUcgccccgaccucggGGguCGCGCCGGg- -3'
miRNA:   3'- cGUGG-UCGCGGG--------------UCguGCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 9807 0.7 0.208287
Target:  5'- cGCGCCAcuacCGCCC-GCAC-CGCCGGg- -3'
miRNA:   3'- -CGUGGUc---GCGGGuCGUGcGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 38737 0.71 0.183628
Target:  5'- cGUACCGGCggugGCCC-GC-CGCagGCCGGUGa -3'
miRNA:   3'- -CGUGGUCG----CGGGuCGuGCG--CGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.