miRNA display CGI


Results 41 - 60 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23202 5' -62.8 NC_005259.1 + 39310 0.66 0.39318
Target:  5'- uGCACgA-CGCCCGcugucGCGC-CGCUGGUGa -3'
miRNA:   3'- -CGUGgUcGCGGGU-----CGUGcGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 41057 0.67 0.314043
Target:  5'- uCACCGaguGCGCCCAcggcucgauGuCACGCaGCCGGUc -3'
miRNA:   3'- cGUGGU---CGCGGGU---------C-GUGCG-CGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 41405 0.67 0.352039
Target:  5'- cGCGCCgcucggGGUGCCCAcgauguGCACGgGCCGc-- -3'
miRNA:   3'- -CGUGG------UCGCGGGU------CGUGCgCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 42542 0.66 0.410487
Target:  5'- gGCACCgagguggcgGGCaGCUCGGCGaGCaGCCGGUc -3'
miRNA:   3'- -CGUGG---------UCG-CGGGUCGUgCG-CGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 44154 0.7 0.224419
Target:  5'- -aACguGCgGUCgAGCAgCGCGCCGGUGu -3'
miRNA:   3'- cgUGguCG-CGGgUCGU-GCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 44777 0.67 0.328859
Target:  5'- cGCAUCGGCGgucgagaaCAGaCGCuCGCCGGUGg -3'
miRNA:   3'- -CGUGGUCGCgg------GUC-GUGcGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 45627 0.79 0.048429
Target:  5'- cCGCCGG-GCCgGGCAgCGCGCCGGUGc -3'
miRNA:   3'- cGUGGUCgCGGgUCGU-GCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 45733 0.66 0.384705
Target:  5'- cGCACCAccgaggccGCGCaCCgccucggggaugAGCACGCccucGCCGGg- -3'
miRNA:   3'- -CGUGGU--------CGCG-GG------------UCGUGCG----CGGCCac -5'
23202 5' -62.8 NC_005259.1 + 46765 0.69 0.266194
Target:  5'- aCACCuGCGCCgaCAGcCGCGCccGCCGGg- -3'
miRNA:   3'- cGUGGuCGCGG--GUC-GUGCG--CGGCCac -5'
23202 5' -62.8 NC_005259.1 + 47269 0.66 0.39318
Target:  5'- cGCGuuCCAGCGCaCCgAGCAgaccgcCGuCGCCGGa- -3'
miRNA:   3'- -CGU--GGUCGCG-GG-UCGU------GC-GCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 48451 0.74 0.112038
Target:  5'- aGCGgCAGCGCguuCCAcCGCGCGCCGGg- -3'
miRNA:   3'- -CGUgGUCGCG---GGUcGUGCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 49422 0.66 0.384705
Target:  5'- -uGCCAGCGagaaaCCGGCGaGCGCCGc-- -3'
miRNA:   3'- cgUGGUCGCg----GGUCGUgCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 49456 0.66 0.410487
Target:  5'- gGCAgCCGGaUGCCCAGCAgGuCGCCcuUGa -3'
miRNA:   3'- -CGU-GGUC-GCGGGUCGUgC-GCGGccAC- -5'
23202 5' -62.8 NC_005259.1 + 50387 0.7 0.223864
Target:  5'- gGC-CCAcGUGUCgCGGCucgccgaGCGCGCCGGUGc -3'
miRNA:   3'- -CGuGGU-CGCGG-GUCG-------UGCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 51034 0.66 0.401774
Target:  5'- -gACgAGCGgCgGGCACGCGCCa--- -3'
miRNA:   3'- cgUGgUCGCgGgUCGUGCGCGGccac -5'
23202 5' -62.8 NC_005259.1 + 52131 0.69 0.259861
Target:  5'- cGCACCGcCGUCCGGCACcuCGCCGa-- -3'
miRNA:   3'- -CGUGGUcGCGGGUCGUGc-GCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 52164 0.68 0.299036
Target:  5'- aGCGCCgaGGCGCUCAuGCAgcaggacCGCGCCGa-- -3'
miRNA:   3'- -CGUGG--UCGCGGGU-CGU-------GCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 52601 0.68 0.28866
Target:  5'- aGCACCAGCGCCguaCGGUggccaacuacgucgaGCuGCGUCGGcUGu -3'
miRNA:   3'- -CGUGGUCGCGG---GUCG---------------UG-CGCGGCC-AC- -5'
23202 5' -62.8 NC_005259.1 + 53222 0.66 0.401774
Target:  5'- uCGCCcGCGCCCuGCuugagguuCGCGCCGc-- -3'
miRNA:   3'- cGUGGuCGCGGGuCGu-------GCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 53787 0.66 0.368123
Target:  5'- -gACCGGC-CUgAGCuCGUGUCGGUGa -3'
miRNA:   3'- cgUGGUCGcGGgUCGuGCGCGGCCAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.