Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23202 | 5' | -62.8 | NC_005259.1 | + | 20659 | 0.75 | 0.102627 |
Target: 5'- gGCACCGGggccgaggaCGCCaugauguggucgcaCGGCACGCGCuCGGUGg -3' miRNA: 3'- -CGUGGUC---------GCGG--------------GUCGUGCGCG-GCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 21891 | 0.67 | 0.321387 |
Target: 5'- uCACCAGCGCCuCGGgAauUGCGCCcGUa -3' miRNA: 3'- cGUGGUCGCGG-GUCgU--GCGCGGcCAc -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 23301 | 0.74 | 0.11813 |
Target: 5'- gGUAUCGGgGUCCGGCGCG-GUCGGUGu -3' miRNA: 3'- -CGUGGUCgCGGGUCGUGCgCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 25947 | 0.7 | 0.21355 |
Target: 5'- aCGCCGGUGCCCGGC-C-CGCCGa-- -3' miRNA: 3'- cGUGGUCGCGGGUCGuGcGCGGCcac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 26435 | 0.69 | 0.259861 |
Target: 5'- cGCACC---GCCgAGCggGCGgGCCGGUGg -3' miRNA: 3'- -CGUGGucgCGGgUCG--UGCgCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 26799 | 0.71 | 0.169666 |
Target: 5'- aGCGCCGcCGCCCGGUugGCcgguaccGgCGGUGg -3' miRNA: 3'- -CGUGGUcGCGGGUCGugCG-------CgGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 27279 | 0.71 | 0.170101 |
Target: 5'- cCGCCuugAGcCGCCgCuGCACGCGCCGGa- -3' miRNA: 3'- cGUGG---UC-GCGG-GuCGUGCGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 27357 | 0.69 | 0.241599 |
Target: 5'- cGUACUgaucgggcuuGGUGCCCGGCACggugaccgGCGgCGGUGu -3' miRNA: 3'- -CGUGG----------UCGCGGGUCGUG--------CGCgGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 27932 | 0.72 | 0.14953 |
Target: 5'- cGguUCGGCGaCCCAGCu--CGCCGGUGa -3' miRNA: 3'- -CguGGUCGC-GGGUCGugcGCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 28770 | 0.69 | 0.241599 |
Target: 5'- uCGCCGGUGCCgacgaGGUACcCGCCGGUc -3' miRNA: 3'- cGUGGUCGCGGg----UCGUGcGCGGCCAc -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 29940 | 0.71 | 0.179017 |
Target: 5'- cCGCCAcGCgGCCCGGuCGCG-GCUGGUGg -3' miRNA: 3'- cGUGGU-CG-CGGGUC-GUGCgCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 31484 | 0.66 | 0.384705 |
Target: 5'- uGC-CCuGCGaCCaCAGCAgggucucacCGCGCCGGa- -3' miRNA: 3'- -CGuGGuCGC-GG-GUCGU---------GCGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 35252 | 0.69 | 0.235753 |
Target: 5'- cGCACuCGcguuguucGCGCCC-GC-CGCGCCGGg- -3' miRNA: 3'- -CGUG-GU--------CGCGGGuCGuGCGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 35460 | 0.66 | 0.410487 |
Target: 5'- cCACCGGCaccgCCAGCAcCGC-CCGGUa -3' miRNA: 3'- cGUGGUCGcg--GGUCGU-GCGcGGCCAc -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 36242 | 0.7 | 0.224419 |
Target: 5'- aGCGCgAGCGCCugcgucggCAGCGCcaCGCCGGa- -3' miRNA: 3'- -CGUGgUCGCGG--------GUCGUGc-GCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 36864 | 0.68 | 0.279233 |
Target: 5'- uGCGCCguugcuGGCaccGCCCGcGCcgACGaCGCCGGUGa -3' miRNA: 3'- -CGUGG------UCG---CGGGU-CG--UGC-GCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 36995 | 0.68 | 0.279233 |
Target: 5'- cGCACCGuucuUGCCCGcGCGCcCGCCGGg- -3' miRNA: 3'- -CGUGGUc---GCGGGU-CGUGcGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 37224 | 0.69 | 0.253651 |
Target: 5'- cCGCCGGgGCgCUGGCcCGUGCCGGa- -3' miRNA: 3'- cGUGGUCgCG-GGUCGuGCGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 38737 | 0.71 | 0.183628 |
Target: 5'- cGUACCGGCggugGCCC-GC-CGCagGCCGGUGa -3' miRNA: 3'- -CGUGGUCG----CGGGuCGuGCG--CGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 38913 | 0.66 | 0.401774 |
Target: 5'- uCAUCAGCGCUUgAGCACGUcgguguugcuguGCCcGGUGc -3' miRNA: 3'- cGUGGUCGCGGG-UCGUGCG------------CGG-CCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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