miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23202 5' -62.8 NC_005259.1 + 48451 0.74 0.112038
Target:  5'- aGCGgCAGCGCguuCCAcCGCGCGCCGGg- -3'
miRNA:   3'- -CGUgGUCGCG---GGUcGUGCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 47269 0.66 0.39318
Target:  5'- cGCGuuCCAGCGCaCCgAGCAgaccgcCGuCGCCGGa- -3'
miRNA:   3'- -CGU--GGUCGCG-GG-UCGU------GC-GCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 46765 0.69 0.266194
Target:  5'- aCACCuGCGCCgaCAGcCGCGCccGCCGGg- -3'
miRNA:   3'- cGUGGuCGCGG--GUC-GUGCG--CGGCCac -5'
23202 5' -62.8 NC_005259.1 + 45733 0.66 0.384705
Target:  5'- cGCACCAccgaggccGCGCaCCgccucggggaugAGCACGCccucGCCGGg- -3'
miRNA:   3'- -CGUGGU--------CGCG-GG------------UCGUGCG----CGGCCac -5'
23202 5' -62.8 NC_005259.1 + 45627 0.79 0.048429
Target:  5'- cCGCCGG-GCCgGGCAgCGCGCCGGUGc -3'
miRNA:   3'- cGUGGUCgCGGgUCGU-GCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 44777 0.67 0.328859
Target:  5'- cGCAUCGGCGgucgagaaCAGaCGCuCGCCGGUGg -3'
miRNA:   3'- -CGUGGUCGCgg------GUC-GUGcGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 44154 0.7 0.224419
Target:  5'- -aACguGCgGUCgAGCAgCGCGCCGGUGu -3'
miRNA:   3'- cgUGguCG-CGGgUCGU-GCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 42542 0.66 0.410487
Target:  5'- gGCACCgagguggcgGGCaGCUCGGCGaGCaGCCGGUc -3'
miRNA:   3'- -CGUGG---------UCG-CGGGUCGUgCG-CGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 41405 0.67 0.352039
Target:  5'- cGCGCCgcucggGGUGCCCAcgauguGCACGgGCCGc-- -3'
miRNA:   3'- -CGUGG------UCGCGGGU------CGUGCgCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 41057 0.67 0.314043
Target:  5'- uCACCGaguGCGCCCAcggcucgauGuCACGCaGCCGGUc -3'
miRNA:   3'- cGUGGU---CGCGGGU---------C-GUGCG-CGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 39310 0.66 0.39318
Target:  5'- uGCACgA-CGCCCGcugucGCGC-CGCUGGUGa -3'
miRNA:   3'- -CGUGgUcGCGGGU-----CGUGcGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 38913 0.66 0.401774
Target:  5'- uCAUCAGCGCUUgAGCACGUcgguguugcuguGCCcGGUGc -3'
miRNA:   3'- cGUGGUCGCGGG-UCGUGCG------------CGG-CCAC- -5'
23202 5' -62.8 NC_005259.1 + 38737 0.71 0.183628
Target:  5'- cGUACCGGCggugGCCC-GC-CGCagGCCGGUGa -3'
miRNA:   3'- -CGUGGUCG----CGGGuCGuGCG--CGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 37224 0.69 0.253651
Target:  5'- cCGCCGGgGCgCUGGCcCGUGCCGGa- -3'
miRNA:   3'- cGUGGUCgCG-GGUCGuGCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 36995 0.68 0.279233
Target:  5'- cGCACCGuucuUGCCCGcGCGCcCGCCGGg- -3'
miRNA:   3'- -CGUGGUc---GCGGGU-CGUGcGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 36864 0.68 0.279233
Target:  5'- uGCGCCguugcuGGCaccGCCCGcGCcgACGaCGCCGGUGa -3'
miRNA:   3'- -CGUGG------UCG---CGGGU-CG--UGC-GCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 36242 0.7 0.224419
Target:  5'- aGCGCgAGCGCCugcgucggCAGCGCcaCGCCGGa- -3'
miRNA:   3'- -CGUGgUCGCGG--------GUCGUGc-GCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 35460 0.66 0.410487
Target:  5'- cCACCGGCaccgCCAGCAcCGC-CCGGUa -3'
miRNA:   3'- cGUGGUCGcg--GGUCGU-GCGcGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 35252 0.69 0.235753
Target:  5'- cGCACuCGcguuguucGCGCCC-GC-CGCGCCGGg- -3'
miRNA:   3'- -CGUG-GU--------CGCGGGuCGuGCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 31484 0.66 0.384705
Target:  5'- uGC-CCuGCGaCCaCAGCAgggucucacCGCGCCGGa- -3'
miRNA:   3'- -CGuGGuCGC-GG-GUCGU---------GCGCGGCCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.