miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23202 5' -62.8 NC_005259.1 + 68870 0.67 0.324361
Target:  5'- -uGCCcGCGCCgGGCGCGCcgaugagguagaugaGgCGGUGg -3'
miRNA:   3'- cgUGGuCGCGGgUCGUGCG---------------CgGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 68803 0.66 0.414006
Target:  5'- gGCGgugUCGGUGCCCGGUACaugcucucggucaaaGCaGUCGGUGa -3'
miRNA:   3'- -CGU---GGUCGCGGGUCGUG---------------CG-CGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 68408 0.66 0.376353
Target:  5'- cCACCAacguagaccuuGaCGCCUcGCGCGgGCCGGUu -3'
miRNA:   3'- cGUGGU-----------C-GCGGGuCGUGCgCGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 64015 0.73 0.127847
Target:  5'- cCACC-GCGCCCgaGGCGCGgcgagGCCGGUGa -3'
miRNA:   3'- cGUGGuCGCGGG--UCGUGCg----CGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 63689 0.72 0.152268
Target:  5'- cGCGCCGGggaucugcgccUGCCCAGCggggaucggggccuGCGCaGCCGGUa -3'
miRNA:   3'- -CGUGGUC-----------GCGGGUCG--------------UGCG-CGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 61943 0.67 0.351248
Target:  5'- cGCGCgGGUGCCgGGgccaccgcagccuCACGCGCCGcUGc -3'
miRNA:   3'- -CGUGgUCGCGGgUC-------------GUGCGCGGCcAC- -5'
23202 5' -62.8 NC_005259.1 + 60487 1.09 0.000249
Target:  5'- cGCACCAGCGCCCAGCACGCGCCGGUGu -3'
miRNA:   3'- -CGUGGUCGCGGGUCGUGCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 60272 0.69 0.259861
Target:  5'- cCACCAGCGCUgccgggCGGCcauCGuCGUCGGUGc -3'
miRNA:   3'- cGUGGUCGCGG------GUCGu--GC-GCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 59913 0.66 0.39318
Target:  5'- -gACaCAGUGCCCcguccauaccaAGCACGCGCCc--- -3'
miRNA:   3'- cgUG-GUCGCGGG-----------UCGUGCGCGGccac -5'
23202 5' -62.8 NC_005259.1 + 56901 0.67 0.321387
Target:  5'- cGCAgCguGGcCGCCgCAGCAggcgugccCGCGUCGGUGa -3'
miRNA:   3'- -CGUgG--UC-GCGG-GUCGU--------GCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 55872 0.7 0.211959
Target:  5'- uCGCCgAGCGCCUcgccccgaccucggGGguCGCGCCGGg- -3'
miRNA:   3'- cGUGG-UCGCGGG--------------UCguGCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 53787 0.66 0.368123
Target:  5'- -gACCGGC-CUgAGCuCGUGUCGGUGa -3'
miRNA:   3'- cgUGGUCGcGGgUCGuGCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 53222 0.66 0.401774
Target:  5'- uCGCCcGCGCCCuGCuugagguuCGCGCCGc-- -3'
miRNA:   3'- cGUGGuCGCGGGuCGu-------GCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 52601 0.68 0.28866
Target:  5'- aGCACCAGCGCCguaCGGUggccaacuacgucgaGCuGCGUCGGcUGu -3'
miRNA:   3'- -CGUGGUCGCGG---GUCG---------------UG-CGCGGCC-AC- -5'
23202 5' -62.8 NC_005259.1 + 52164 0.68 0.299036
Target:  5'- aGCGCCgaGGCGCUCAuGCAgcaggacCGCGCCGa-- -3'
miRNA:   3'- -CGUGG--UCGCGGGU-CGU-------GCGCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 52131 0.69 0.259861
Target:  5'- cGCACCGcCGUCCGGCACcuCGCCGa-- -3'
miRNA:   3'- -CGUGGUcGCGGGUCGUGc-GCGGCcac -5'
23202 5' -62.8 NC_005259.1 + 51034 0.66 0.401774
Target:  5'- -gACgAGCGgCgGGCACGCGCCa--- -3'
miRNA:   3'- cgUGgUCGCgGgUCGUGCGCGGccac -5'
23202 5' -62.8 NC_005259.1 + 50387 0.7 0.223864
Target:  5'- gGC-CCAcGUGUCgCGGCucgccgaGCGCGCCGGUGc -3'
miRNA:   3'- -CGuGGU-CGCGG-GUCG-------UGCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 49456 0.66 0.410487
Target:  5'- gGCAgCCGGaUGCCCAGCAgGuCGCCcuUGa -3'
miRNA:   3'- -CGU-GGUC-GCGGGUCGUgC-GCGGccAC- -5'
23202 5' -62.8 NC_005259.1 + 49422 0.66 0.384705
Target:  5'- -uGCCAGCGagaaaCCGGCGaGCGCCGc-- -3'
miRNA:   3'- cgUGGUCGCg----GGUCGUgCGCGGCcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.