miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23203 5' -56.6 NC_005259.1 + 60372 1.07 0.001289
Target:  5'- gAAAUCCCGCCAAUCGCCGGACAGCGGc -3'
miRNA:   3'- -UUUAGGGCGGUUAGCGGCCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 5706 0.85 0.050134
Target:  5'- -cGUgCCGCCAAggccagCGCCGGACGGCGGc -3'
miRNA:   3'- uuUAgGGCGGUUa-----GCGGCCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 47291 0.81 0.088192
Target:  5'- ----aCCGCC-GUCGCCGGACAGCGa -3'
miRNA:   3'- uuuagGGCGGuUAGCGGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 45621 0.76 0.204377
Target:  5'- cGAUgCCCGCCGG--GCCGGGCAGCGc -3'
miRNA:   3'- uUUA-GGGCGGUUagCGGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 33313 0.75 0.220887
Target:  5'- cGAUCCCGCC-GUCGgCGGuCAcGCGGa -3'
miRNA:   3'- uUUAGGGCGGuUAGCgGCCuGU-CGCC- -5'
23203 5' -56.6 NC_005259.1 + 54483 0.75 0.226638
Target:  5'- -cAUCCCGCCGAgggucaUCGgCGGGCauGGCGGc -3'
miRNA:   3'- uuUAGGGCGGUU------AGCgGCCUG--UCGCC- -5'
23203 5' -56.6 NC_005259.1 + 47977 0.75 0.23852
Target:  5'- ---gCCCGCgAAUaUGCCGGGCAGCGc -3'
miRNA:   3'- uuuaGGGCGgUUA-GCGGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 4981 0.72 0.344645
Target:  5'- cGAGUUCgGCCGAUgGCCGGGCAcuaCGGc -3'
miRNA:   3'- -UUUAGGgCGGUUAgCGGCCUGUc--GCC- -5'
23203 5' -56.6 NC_005259.1 + 17763 0.72 0.378134
Target:  5'- ----gCCGCCGcgCGCCGGGCcgAGCGc -3'
miRNA:   3'- uuuagGGCGGUuaGCGGCCUG--UCGCc -5'
23203 5' -56.6 NC_005259.1 + 15300 0.72 0.378134
Target:  5'- ----aCCGCCGAccUCGCCGcccacggucucGACGGCGGu -3'
miRNA:   3'- uuuagGGCGGUU--AGCGGC-----------CUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 66261 0.71 0.386841
Target:  5'- ----gCgGCCcg-CGCCGGGCGGCGGc -3'
miRNA:   3'- uuuagGgCGGuuaGCGGCCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 16561 0.71 0.395679
Target:  5'- gAGAUCCCGCCcaccgggcaGAUCGCCgaGGACAucgcccGCGa -3'
miRNA:   3'- -UUUAGGGCGG---------UUAGCGG--CCUGU------CGCc -5'
23203 5' -56.6 NC_005259.1 + 25960 0.7 0.441762
Target:  5'- ---gCCCGCCGA-CGCCugcgaugagaccGGGCAGCGc -3'
miRNA:   3'- uuuaGGGCGGUUaGCGG------------CCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 36883 0.7 0.461028
Target:  5'- ---cCCgCGCCGAcgaCGCCGGugAGCGc -3'
miRNA:   3'- uuuaGG-GCGGUUa--GCGGCCugUCGCc -5'
23203 5' -56.6 NC_005259.1 + 43028 0.7 0.461028
Target:  5'- cGAUgCCGCCGAgcaggcCGCCGaGCAGCGa -3'
miRNA:   3'- uUUAgGGCGGUUa-----GCGGCcUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 37049 0.7 0.470827
Target:  5'- ---gCCCGCCAc-CGCCcacGGCGGCGGu -3'
miRNA:   3'- uuuaGGGCGGUuaGCGGc--CUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 28224 0.69 0.490733
Target:  5'- -cGUgCCGCCAc-CGUCGG-CGGCGGg -3'
miRNA:   3'- uuUAgGGCGGUuaGCGGCCuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 7025 0.69 0.511021
Target:  5'- ---cCCCGCCGAgCGCCc--CGGCGGg -3'
miRNA:   3'- uuuaGGGCGGUUaGCGGccuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 7779 0.69 0.511021
Target:  5'- ---cCCCGCCGAgCGCCc--CGGCGGg -3'
miRNA:   3'- uuuaGGGCGGUUaGCGGccuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 3286 0.69 0.511021
Target:  5'- -cGUCgCCGCC--UCGCCGGucccuCGGCGa -3'
miRNA:   3'- uuUAG-GGCGGuuAGCGGCCu----GUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.