miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23203 5' -56.6 NC_005259.1 + 2144 0.68 0.552572
Target:  5'- ---aCCCGCaCGGU-GCUGGcCAGCGGc -3'
miRNA:   3'- uuuaGGGCG-GUUAgCGGCCuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 3286 0.69 0.511021
Target:  5'- -cGUCgCCGCC--UCGCCGGucccuCGGCGa -3'
miRNA:   3'- uuUAG-GGCGGuuAGCGGCCu----GUCGCc -5'
23203 5' -56.6 NC_005259.1 + 4981 0.72 0.344645
Target:  5'- cGAGUUCgGCCGAUgGCCGGGCAcuaCGGc -3'
miRNA:   3'- -UUUAGGgCGGUUAgCGGCCUGUc--GCC- -5'
23203 5' -56.6 NC_005259.1 + 5636 0.66 0.702177
Target:  5'- cGGAUCgUGCCcggCGa-GGACGGCGGg -3'
miRNA:   3'- -UUUAGgGCGGuuaGCggCCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 5706 0.85 0.050134
Target:  5'- -cGUgCCGCCAAggccagCGCCGGACGGCGGc -3'
miRNA:   3'- uuUAgGGCGGUUa-----GCGGCCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 7025 0.69 0.511021
Target:  5'- ---cCCCGCCGAgCGCCc--CGGCGGg -3'
miRNA:   3'- uuuaGGGCGGUUaGCGGccuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 7779 0.69 0.511021
Target:  5'- ---cCCCGCCGAgCGCCc--CGGCGGg -3'
miRNA:   3'- uuuaGGGCGGUUaGCGGccuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 8056 0.67 0.659558
Target:  5'- ----aCCGCCGGUCGCCGccGACAuCGa -3'
miRNA:   3'- uuuagGGCGGUUAGCGGC--CUGUcGCc -5'
23203 5' -56.6 NC_005259.1 + 8354 0.66 0.680956
Target:  5'- --cUgCUGCCGguAUCGCUcGGCGGCGGc -3'
miRNA:   3'- uuuAgGGCGGU--UAGCGGcCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 13164 0.67 0.627301
Target:  5'- -cAUCCCGCCcgaGAcCGCCcGGCAGCu- -3'
miRNA:   3'- uuUAGGGCGG---UUaGCGGcCUGUCGcc -5'
23203 5' -56.6 NC_005259.1 + 15300 0.72 0.378134
Target:  5'- ----aCCGCCGAccUCGCCGcccacggucucGACGGCGGu -3'
miRNA:   3'- uuuagGGCGGUU--AGCGGC-----------CUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 16561 0.71 0.395679
Target:  5'- gAGAUCCCGCCcaccgggcaGAUCGCCgaGGACAucgcccGCGa -3'
miRNA:   3'- -UUUAGGGCGG---------UUAGCGG--CCUGU------CGCc -5'
23203 5' -56.6 NC_005259.1 + 17763 0.72 0.378134
Target:  5'- ----gCCGCCGcgCGCCGGGCcgAGCGc -3'
miRNA:   3'- uuuagGGCGGUuaGCGGCCUG--UCGCc -5'
23203 5' -56.6 NC_005259.1 + 18770 0.69 0.521296
Target:  5'- ---gCCUGCCAcAUCGCggUGGGCAaGCGGu -3'
miRNA:   3'- uuuaGGGCGGU-UAGCG--GCCUGU-CGCC- -5'
23203 5' -56.6 NC_005259.1 + 19376 0.66 0.691594
Target:  5'- ---cCCCGCUGAUCaCCGGccccaacgGCAGCGu -3'
miRNA:   3'- uuuaGGGCGGUUAGcGGCC--------UGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 25192 0.69 0.53165
Target:  5'- ----gCCGCCGAUCccaCCGGGguCAGCGGc -3'
miRNA:   3'- uuuagGGCGGUUAGc--GGCCU--GUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 25960 0.7 0.441762
Target:  5'- ---gCCCGCCGA-CGCCugcgaugagaccGGGCAGCGc -3'
miRNA:   3'- uuuaGGGCGGUUaGCGG------------CCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 26605 0.68 0.584388
Target:  5'- uGAUCCaCGCCg--CGCCGGAC--CGGu -3'
miRNA:   3'- uUUAGG-GCGGuuaGCGGCCUGucGCC- -5'
23203 5' -56.6 NC_005259.1 + 27205 0.68 0.552572
Target:  5'- --cUCCCGCaccgcgaGCuCGGugAGCGGg -3'
miRNA:   3'- uuuAGGGCGguuag--CG-GCCugUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 27288 0.67 0.659558
Target:  5'- ----gCCGCCGcugcacgCGCCGGACA-CGGu -3'
miRNA:   3'- uuuagGGCGGUua-----GCGGCCUGUcGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.