miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23203 5' -56.6 NC_005259.1 + 28224 0.69 0.490733
Target:  5'- -cGUgCCGCCAc-CGUCGG-CGGCGGg -3'
miRNA:   3'- uuUAgGGCGGUuaGCGGCCuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 29669 0.67 0.627301
Target:  5'- ----aCCGCCucGUUGCCGGAC-GCGc -3'
miRNA:   3'- uuuagGGCGGu-UAGCGGCCUGuCGCc -5'
23203 5' -56.6 NC_005259.1 + 32561 0.68 0.592939
Target:  5'- ---cCCCGgCGAgcgcggggauagCGuuGGGCAGCGGu -3'
miRNA:   3'- uuuaGGGCgGUUa-----------GCggCCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 33313 0.75 0.220887
Target:  5'- cGAUCCCGCC-GUCGgCGGuCAcGCGGa -3'
miRNA:   3'- uUUAGGGCGGuUAGCgGCCuGU-CGCC- -5'
23203 5' -56.6 NC_005259.1 + 34866 0.66 0.723136
Target:  5'- -uGUCCuCGUCGGU-GCCGGACcGgGGu -3'
miRNA:   3'- uuUAGG-GCGGUUAgCGGCCUGuCgCC- -5'
23203 5' -56.6 NC_005259.1 + 36486 0.66 0.680956
Target:  5'- cGAUCUCG-CGGUCGaCGGGCAGCu- -3'
miRNA:   3'- uUUAGGGCgGUUAGCgGCCUGUCGcc -5'
23203 5' -56.6 NC_005259.1 + 36883 0.7 0.461028
Target:  5'- ---cCCgCGCCGAcgaCGCCGGugAGCGc -3'
miRNA:   3'- uuuaGG-GCGGUUa--GCGGCCugUCGCc -5'
23203 5' -56.6 NC_005259.1 + 37049 0.7 0.470827
Target:  5'- ---gCCCGCCAc-CGCCcacGGCGGCGGu -3'
miRNA:   3'- uuuaGGGCGGUuaGCGGc--CUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 37171 0.67 0.659558
Target:  5'- ---gCCCGCCGA-CGCCgcgcgaGGACGagcuGCGGc -3'
miRNA:   3'- uuuaGGGCGGUUaGCGG------CCUGU----CGCC- -5'
23203 5' -56.6 NC_005259.1 + 38750 0.68 0.59508
Target:  5'- ---gCCCGCCGcagGCCGGugAGCu- -3'
miRNA:   3'- uuuaGGGCGGUuagCGGCCugUCGcc -5'
23203 5' -56.6 NC_005259.1 + 40452 0.67 0.647742
Target:  5'- ---gCCUGCCGGUgugguugacguacUGCCGGGCcgcGCGGu -3'
miRNA:   3'- uuuaGGGCGGUUA-------------GCGGCCUGu--CGCC- -5'
23203 5' -56.6 NC_005259.1 + 43028 0.7 0.461028
Target:  5'- cGAUgCCGCCGAgcaggcCGCCGaGCAGCGa -3'
miRNA:   3'- uUUAgGGCGGUUa-----GCGGCcUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 43809 0.67 0.616545
Target:  5'- cGAGUCCuUGCCGGgcguacCGCCGGACAcaGGg -3'
miRNA:   3'- -UUUAGG-GCGGUUa-----GCGGCCUGUcgCC- -5'
23203 5' -56.6 NC_005259.1 + 43908 0.67 0.627301
Target:  5'- ---gCCgGCUGAUCGauGGGCAGCGa -3'
miRNA:   3'- uuuaGGgCGGUUAGCggCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 45621 0.76 0.204377
Target:  5'- cGAUgCCCGCCGG--GCCGGGCAGCGc -3'
miRNA:   3'- uUUA-GGGCGGUUagCGGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 47291 0.81 0.088192
Target:  5'- ----aCCGCC-GUCGCCGGACAGCGa -3'
miRNA:   3'- uuuagGGCGGuUAGCGGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 47625 0.66 0.691594
Target:  5'- --uUCuuGUC-GUCGCCgaGGGCAGCGa -3'
miRNA:   3'- uuuAGggCGGuUAGCGG--CCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 47977 0.75 0.23852
Target:  5'- ---gCCCGCgAAUaUGCCGGGCAGCGc -3'
miRNA:   3'- uuuaGGGCGgUUA-GCGGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 49713 0.68 0.563127
Target:  5'- gAGAUCCgGCagauauUCGgCGGGCGGCGa -3'
miRNA:   3'- -UUUAGGgCGguu---AGCgGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 53259 0.66 0.712694
Target:  5'- -cGUCgCCGCCGcuGUCGCCGGuGCcGCc- -3'
miRNA:   3'- uuUAG-GGCGGU--UAGCGGCC-UGuCGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.