miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23203 5' -56.6 NC_005259.1 + 18770 0.69 0.521296
Target:  5'- ---gCCUGCCAcAUCGCggUGGGCAaGCGGu -3'
miRNA:   3'- uuuaGGGCGGU-UAGCG--GCCUGU-CGCC- -5'
23203 5' -56.6 NC_005259.1 + 25192 0.69 0.53165
Target:  5'- ----gCCGCCGAUCccaCCGGGguCAGCGGc -3'
miRNA:   3'- uuuagGGCGGUUAGc--GGCCU--GUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 62725 0.69 0.542078
Target:  5'- gGGAUCUCGC---UCGaCCGGAcCGGCGGc -3'
miRNA:   3'- -UUUAGGGCGguuAGC-GGCCU-GUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 2144 0.68 0.552572
Target:  5'- ---aCCCGCaCGGU-GCUGGcCAGCGGc -3'
miRNA:   3'- uuuaGGGCG-GUUAgCGGCCuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 27205 0.68 0.552572
Target:  5'- --cUCCCGCaccgcgaGCuCGGugAGCGGg -3'
miRNA:   3'- uuuAGGGCGguuag--CG-GCCugUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 49713 0.68 0.563127
Target:  5'- gAGAUCCgGCagauauUCGgCGGGCGGCGa -3'
miRNA:   3'- -UUUAGGgCGguu---AGCgGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 57676 0.68 0.577991
Target:  5'- -uGUCCgGCCAAUCgaccguggccagguuGCCGGGCuugcccgacucGCGGg -3'
miRNA:   3'- uuUAGGgCGGUUAG---------------CGGCCUGu----------CGCC- -5'
23203 5' -56.6 NC_005259.1 + 26605 0.68 0.584388
Target:  5'- uGAUCCaCGCCg--CGCCGGAC--CGGu -3'
miRNA:   3'- uUUAGG-GCGGuuaGCGGCCUGucGCC- -5'
23203 5' -56.6 NC_005259.1 + 32561 0.68 0.592939
Target:  5'- ---cCCCGgCGAgcgcggggauagCGuuGGGCAGCGGu -3'
miRNA:   3'- uuuaGGGCgGUUa-----------GCggCCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 55088 0.68 0.59508
Target:  5'- --cUUCUGCUGAUCGCUGccGAUGGCGGc -3'
miRNA:   3'- uuuAGGGCGGUUAGCGGC--CUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 38750 0.68 0.59508
Target:  5'- ---gCCCGCCGcagGCCGGugAGCu- -3'
miRNA:   3'- uuuaGGGCGGUuagCGGCCugUCGcc -5'
23203 5' -56.6 NC_005259.1 + 43809 0.67 0.616545
Target:  5'- cGAGUCCuUGCCGGgcguacCGCCGGACAcaGGg -3'
miRNA:   3'- -UUUAGG-GCGGUUa-----GCGGCCUGUcgCC- -5'
23203 5' -56.6 NC_005259.1 + 43908 0.67 0.627301
Target:  5'- ---gCCgGCUGAUCGauGGGCAGCGa -3'
miRNA:   3'- uuuaGGgCGGUUAGCggCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 13164 0.67 0.627301
Target:  5'- -cAUCCCGCCcgaGAcCGCCcGGCAGCu- -3'
miRNA:   3'- uuUAGGGCGG---UUaGCGGcCUGUCGcc -5'
23203 5' -56.6 NC_005259.1 + 29669 0.67 0.627301
Target:  5'- ----aCCGCCucGUUGCCGGAC-GCGc -3'
miRNA:   3'- uuuagGGCGGu-UAGCGGCCUGuCGCc -5'
23203 5' -56.6 NC_005259.1 + 67187 0.67 0.638062
Target:  5'- uGAUgCCCGCCucgucucccUCGCCGcuguCGGCGGg -3'
miRNA:   3'- uUUA-GGGCGGuu-------AGCGGCcu--GUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 40452 0.67 0.647742
Target:  5'- ---gCCUGCCGGUgugguugacguacUGCCGGGCcgcGCGGu -3'
miRNA:   3'- uuuaGGGCGGUUA-------------GCGGCCUGu--CGCC- -5'
23203 5' -56.6 NC_005259.1 + 8056 0.67 0.659558
Target:  5'- ----aCCGCCGGUCGCCGccGACAuCGa -3'
miRNA:   3'- uuuagGGCGGUUAGCGGC--CUGUcGCc -5'
23203 5' -56.6 NC_005259.1 + 27288 0.67 0.659558
Target:  5'- ----gCCGCCGcugcacgCGCCGGACA-CGGu -3'
miRNA:   3'- uuuagGGCGGUua-----GCGGCCUGUcGCC- -5'
23203 5' -56.6 NC_005259.1 + 37171 0.67 0.659558
Target:  5'- ---gCCCGCCGA-CGCCgcgcgaGGACGagcuGCGGc -3'
miRNA:   3'- uuuaGGGCGGUUaGCGG------CCUGU----CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.