miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23203 5' -56.6 NC_005259.1 + 32561 0.68 0.592939
Target:  5'- ---cCCCGgCGAgcgcggggauagCGuuGGGCAGCGGu -3'
miRNA:   3'- uuuaGGGCgGUUa-----------GCggCCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 26605 0.68 0.584388
Target:  5'- uGAUCCaCGCCg--CGCCGGAC--CGGu -3'
miRNA:   3'- uUUAGG-GCGGuuaGCGGCCUGucGCC- -5'
23203 5' -56.6 NC_005259.1 + 57676 0.68 0.577991
Target:  5'- -uGUCCgGCCAAUCgaccguggccagguuGCCGGGCuugcccgacucGCGGg -3'
miRNA:   3'- uuUAGGgCGGUUAG---------------CGGCCUGu----------CGCC- -5'
23203 5' -56.6 NC_005259.1 + 27205 0.68 0.552572
Target:  5'- --cUCCCGCaccgcgaGCuCGGugAGCGGg -3'
miRNA:   3'- uuuAGGGCGguuag--CG-GCCugUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 2144 0.68 0.552572
Target:  5'- ---aCCCGCaCGGU-GCUGGcCAGCGGc -3'
miRNA:   3'- uuuaGGGCG-GUUAgCGGCCuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 49713 0.68 0.563127
Target:  5'- gAGAUCCgGCagauauUCGgCGGGCGGCGa -3'
miRNA:   3'- -UUUAGGgCGguu---AGCgGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 55088 0.68 0.59508
Target:  5'- --cUUCUGCUGAUCGCUGccGAUGGCGGc -3'
miRNA:   3'- uuuAGGGCGGUUAGCGGC--CUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 7025 0.69 0.511021
Target:  5'- ---cCCCGCCGAgCGCCc--CGGCGGg -3'
miRNA:   3'- uuuaGGGCGGUUaGCGGccuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 28224 0.69 0.490733
Target:  5'- -cGUgCCGCCAc-CGUCGG-CGGCGGg -3'
miRNA:   3'- uuUAgGGCGGUuaGCGGCCuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 18770 0.69 0.521296
Target:  5'- ---gCCUGCCAcAUCGCggUGGGCAaGCGGu -3'
miRNA:   3'- uuuaGGGCGGU-UAGCG--GCCUGU-CGCC- -5'
23203 5' -56.6 NC_005259.1 + 3286 0.69 0.511021
Target:  5'- -cGUCgCCGCC--UCGCCGGucccuCGGCGa -3'
miRNA:   3'- uuUAG-GGCGGuuAGCGGCCu----GUCGCc -5'
23203 5' -56.6 NC_005259.1 + 7779 0.69 0.511021
Target:  5'- ---cCCCGCCGAgCGCCc--CGGCGGg -3'
miRNA:   3'- uuuaGGGCGGUUaGCGGccuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 25192 0.69 0.53165
Target:  5'- ----gCCGCCGAUCccaCCGGGguCAGCGGc -3'
miRNA:   3'- uuuagGGCGGUUAGc--GGCCU--GUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 62725 0.69 0.542078
Target:  5'- gGGAUCUCGC---UCGaCCGGAcCGGCGGc -3'
miRNA:   3'- -UUUAGGGCGguuAGC-GGCCU-GUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 43028 0.7 0.461028
Target:  5'- cGAUgCCGCCGAgcaggcCGCCGaGCAGCGa -3'
miRNA:   3'- uUUAgGGCGGUUa-----GCGGCcUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 36883 0.7 0.461028
Target:  5'- ---cCCgCGCCGAcgaCGCCGGugAGCGc -3'
miRNA:   3'- uuuaGG-GCGGUUa--GCGGCCugUCGCc -5'
23203 5' -56.6 NC_005259.1 + 25960 0.7 0.441762
Target:  5'- ---gCCCGCCGA-CGCCugcgaugagaccGGGCAGCGc -3'
miRNA:   3'- uuuaGGGCGGUUaGCGG------------CCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 37049 0.7 0.470827
Target:  5'- ---gCCCGCCAc-CGCCcacGGCGGCGGu -3'
miRNA:   3'- uuuaGGGCGGUuaGCGGc--CUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 16561 0.71 0.395679
Target:  5'- gAGAUCCCGCCcaccgggcaGAUCGCCgaGGACAucgcccGCGa -3'
miRNA:   3'- -UUUAGGGCGG---------UUAGCGG--CCUGU------CGCc -5'
23203 5' -56.6 NC_005259.1 + 66261 0.71 0.386841
Target:  5'- ----gCgGCCcg-CGCCGGGCGGCGGc -3'
miRNA:   3'- uuuagGgCGGuuaGCGGCCUGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.