miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23203 5' -56.6 NC_005259.1 + 19376 0.66 0.691594
Target:  5'- ---cCCCGCUGAUCaCCGGccccaacgGCAGCGu -3'
miRNA:   3'- uuuaGGGCGGUUAGcGGCC--------UGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 68537 0.66 0.702177
Target:  5'- ---gCCCGCCAcgCGUCG-ACAuCGGg -3'
miRNA:   3'- uuuaGGGCGGUuaGCGGCcUGUcGCC- -5'
23203 5' -56.6 NC_005259.1 + 34866 0.66 0.723136
Target:  5'- -uGUCCuCGUCGGU-GCCGGACcGgGGu -3'
miRNA:   3'- uuUAGG-GCGGUUAgCGGCCUGuCgCC- -5'
23203 5' -56.6 NC_005259.1 + 66632 0.66 0.723136
Target:  5'- -cGUCCCugGCCAccgcucggauuGcUGCCGGuCGGCGGu -3'
miRNA:   3'- uuUAGGG--CGGU-----------UaGCGGCCuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 56235 0.66 0.691594
Target:  5'- -cGUCgCCGCCGAccaCGuuGGGauCGGCGGc -3'
miRNA:   3'- uuUAG-GGCGGUUa--GCggCCU--GUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 8354 0.66 0.680956
Target:  5'- --cUgCUGCCGguAUCGCUcGGCGGCGGc -3'
miRNA:   3'- uuuAgGGCGGU--UAGCGGcCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 36486 0.66 0.680956
Target:  5'- cGAUCUCG-CGGUCGaCGGGCAGCu- -3'
miRNA:   3'- uUUAGGGCgGUUAGCgGCCUGUCGcc -5'
23203 5' -56.6 NC_005259.1 + 5636 0.66 0.702177
Target:  5'- cGGAUCgUGCCcggCGa-GGACGGCGGg -3'
miRNA:   3'- -UUUAGgGCGGuuaGCggCCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 53259 0.66 0.712694
Target:  5'- -cGUCgCCGCCGcuGUCGCCGGuGCcGCc- -3'
miRNA:   3'- uuUAG-GGCGGU--UAGCGGCC-UGuCGcc -5'
23203 5' -56.6 NC_005259.1 + 47625 0.66 0.691594
Target:  5'- --uUCuuGUC-GUCGCCgaGGGCAGCGa -3'
miRNA:   3'- uuuAGggCGGuUAGCGG--CCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 37171 0.67 0.659558
Target:  5'- ---gCCCGCCGA-CGCCgcgcgaGGACGagcuGCGGc -3'
miRNA:   3'- uuuaGGGCGGUUaGCGG------CCUGU----CGCC- -5'
23203 5' -56.6 NC_005259.1 + 27288 0.67 0.659558
Target:  5'- ----gCCGCCGcugcacgCGCCGGACA-CGGu -3'
miRNA:   3'- uuuagGGCGGUua-----GCGGCCUGUcGCC- -5'
23203 5' -56.6 NC_005259.1 + 13164 0.67 0.627301
Target:  5'- -cAUCCCGCCcgaGAcCGCCcGGCAGCu- -3'
miRNA:   3'- uuUAGGGCGG---UUaGCGGcCUGUCGcc -5'
23203 5' -56.6 NC_005259.1 + 40452 0.67 0.647742
Target:  5'- ---gCCUGCCGGUgugguugacguacUGCCGGGCcgcGCGGu -3'
miRNA:   3'- uuuaGGGCGGUUA-------------GCGGCCUGu--CGCC- -5'
23203 5' -56.6 NC_005259.1 + 67187 0.67 0.638062
Target:  5'- uGAUgCCCGCCucgucucccUCGCCGcuguCGGCGGg -3'
miRNA:   3'- uUUA-GGGCGGuu-------AGCGGCcu--GUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 29669 0.67 0.627301
Target:  5'- ----aCCGCCucGUUGCCGGAC-GCGc -3'
miRNA:   3'- uuuagGGCGGu-UAGCGGCCUGuCGCc -5'
23203 5' -56.6 NC_005259.1 + 43908 0.67 0.627301
Target:  5'- ---gCCgGCUGAUCGauGGGCAGCGa -3'
miRNA:   3'- uuuaGGgCGGUUAGCggCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 43809 0.67 0.616545
Target:  5'- cGAGUCCuUGCCGGgcguacCGCCGGACAcaGGg -3'
miRNA:   3'- -UUUAGG-GCGGUUa-----GCGGCCUGUcgCC- -5'
23203 5' -56.6 NC_005259.1 + 8056 0.67 0.659558
Target:  5'- ----aCCGCCGGUCGCCGccGACAuCGa -3'
miRNA:   3'- uuuagGGCGGUUAGCGGC--CUGUcGCc -5'
23203 5' -56.6 NC_005259.1 + 57676 0.68 0.577991
Target:  5'- -uGUCCgGCCAAUCgaccguggccagguuGCCGGGCuugcccgacucGCGGg -3'
miRNA:   3'- uuUAGGgCGGUUAG---------------CGGCCUGu----------CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.