miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23203 5' -56.6 NC_005259.1 + 38750 0.68 0.59508
Target:  5'- ---gCCCGCCGcagGCCGGugAGCu- -3'
miRNA:   3'- uuuaGGGCGGUuagCGGCCugUCGcc -5'
23203 5' -56.6 NC_005259.1 + 37171 0.67 0.659558
Target:  5'- ---gCCCGCCGA-CGCCgcgcgaGGACGagcuGCGGc -3'
miRNA:   3'- uuuaGGGCGGUUaGCGG------CCUGU----CGCC- -5'
23203 5' -56.6 NC_005259.1 + 37049 0.7 0.470827
Target:  5'- ---gCCCGCCAc-CGCCcacGGCGGCGGu -3'
miRNA:   3'- uuuaGGGCGGUuaGCGGc--CUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 36883 0.7 0.461028
Target:  5'- ---cCCgCGCCGAcgaCGCCGGugAGCGc -3'
miRNA:   3'- uuuaGG-GCGGUUa--GCGGCCugUCGCc -5'
23203 5' -56.6 NC_005259.1 + 36486 0.66 0.680956
Target:  5'- cGAUCUCG-CGGUCGaCGGGCAGCu- -3'
miRNA:   3'- uUUAGGGCgGUUAGCgGCCUGUCGcc -5'
23203 5' -56.6 NC_005259.1 + 34866 0.66 0.723136
Target:  5'- -uGUCCuCGUCGGU-GCCGGACcGgGGu -3'
miRNA:   3'- uuUAGG-GCGGUUAgCGGCCUGuCgCC- -5'
23203 5' -56.6 NC_005259.1 + 33313 0.75 0.220887
Target:  5'- cGAUCCCGCC-GUCGgCGGuCAcGCGGa -3'
miRNA:   3'- uUUAGGGCGGuUAGCgGCCuGU-CGCC- -5'
23203 5' -56.6 NC_005259.1 + 32561 0.68 0.592939
Target:  5'- ---cCCCGgCGAgcgcggggauagCGuuGGGCAGCGGu -3'
miRNA:   3'- uuuaGGGCgGUUa-----------GCggCCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 29669 0.67 0.627301
Target:  5'- ----aCCGCCucGUUGCCGGAC-GCGc -3'
miRNA:   3'- uuuagGGCGGu-UAGCGGCCUGuCGCc -5'
23203 5' -56.6 NC_005259.1 + 28224 0.69 0.490733
Target:  5'- -cGUgCCGCCAc-CGUCGG-CGGCGGg -3'
miRNA:   3'- uuUAgGGCGGUuaGCGGCCuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 27288 0.67 0.659558
Target:  5'- ----gCCGCCGcugcacgCGCCGGACA-CGGu -3'
miRNA:   3'- uuuagGGCGGUua-----GCGGCCUGUcGCC- -5'
23203 5' -56.6 NC_005259.1 + 27205 0.68 0.552572
Target:  5'- --cUCCCGCaccgcgaGCuCGGugAGCGGg -3'
miRNA:   3'- uuuAGGGCGguuag--CG-GCCugUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 26605 0.68 0.584388
Target:  5'- uGAUCCaCGCCg--CGCCGGAC--CGGu -3'
miRNA:   3'- uUUAGG-GCGGuuaGCGGCCUGucGCC- -5'
23203 5' -56.6 NC_005259.1 + 25960 0.7 0.441762
Target:  5'- ---gCCCGCCGA-CGCCugcgaugagaccGGGCAGCGc -3'
miRNA:   3'- uuuaGGGCGGUUaGCGG------------CCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 25192 0.69 0.53165
Target:  5'- ----gCCGCCGAUCccaCCGGGguCAGCGGc -3'
miRNA:   3'- uuuagGGCGGUUAGc--GGCCU--GUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 19376 0.66 0.691594
Target:  5'- ---cCCCGCUGAUCaCCGGccccaacgGCAGCGu -3'
miRNA:   3'- uuuaGGGCGGUUAGcGGCC--------UGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 18770 0.69 0.521296
Target:  5'- ---gCCUGCCAcAUCGCggUGGGCAaGCGGu -3'
miRNA:   3'- uuuaGGGCGGU-UAGCG--GCCUGU-CGCC- -5'
23203 5' -56.6 NC_005259.1 + 17763 0.72 0.378134
Target:  5'- ----gCCGCCGcgCGCCGGGCcgAGCGc -3'
miRNA:   3'- uuuagGGCGGUuaGCGGCCUG--UCGCc -5'
23203 5' -56.6 NC_005259.1 + 16561 0.71 0.395679
Target:  5'- gAGAUCCCGCCcaccgggcaGAUCGCCgaGGACAucgcccGCGa -3'
miRNA:   3'- -UUUAGGGCGG---------UUAGCGG--CCUGU------CGCc -5'
23203 5' -56.6 NC_005259.1 + 15300 0.72 0.378134
Target:  5'- ----aCCGCCGAccUCGCCGcccacggucucGACGGCGGu -3'
miRNA:   3'- uuuagGGCGGUU--AGCGGC-----------CUGUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.