miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23203 5' -56.6 NC_005259.1 + 68537 0.66 0.702177
Target:  5'- ---gCCCGCCAcgCGUCG-ACAuCGGg -3'
miRNA:   3'- uuuaGGGCGGUuaGCGGCcUGUcGCC- -5'
23203 5' -56.6 NC_005259.1 + 67187 0.67 0.638062
Target:  5'- uGAUgCCCGCCucgucucccUCGCCGcuguCGGCGGg -3'
miRNA:   3'- uUUA-GGGCGGuu-------AGCGGCcu--GUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 66632 0.66 0.723136
Target:  5'- -cGUCCCugGCCAccgcucggauuGcUGCCGGuCGGCGGu -3'
miRNA:   3'- uuUAGGG--CGGU-----------UaGCGGCCuGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 66261 0.71 0.386841
Target:  5'- ----gCgGCCcg-CGCCGGGCGGCGGc -3'
miRNA:   3'- uuuagGgCGGuuaGCGGCCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 62725 0.69 0.542078
Target:  5'- gGGAUCUCGC---UCGaCCGGAcCGGCGGc -3'
miRNA:   3'- -UUUAGGGCGguuAGC-GGCCU-GUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 60372 1.07 0.001289
Target:  5'- gAAAUCCCGCCAAUCGCCGGACAGCGGc -3'
miRNA:   3'- -UUUAGGGCGGUUAGCGGCCUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 57676 0.68 0.577991
Target:  5'- -uGUCCgGCCAAUCgaccguggccagguuGCCGGGCuugcccgacucGCGGg -3'
miRNA:   3'- uuUAGGgCGGUUAG---------------CGGCCUGu----------CGCC- -5'
23203 5' -56.6 NC_005259.1 + 56235 0.66 0.691594
Target:  5'- -cGUCgCCGCCGAccaCGuuGGGauCGGCGGc -3'
miRNA:   3'- uuUAG-GGCGGUUa--GCggCCU--GUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 55088 0.68 0.59508
Target:  5'- --cUUCUGCUGAUCGCUGccGAUGGCGGc -3'
miRNA:   3'- uuuAGGGCGGUUAGCGGC--CUGUCGCC- -5'
23203 5' -56.6 NC_005259.1 + 54483 0.75 0.226638
Target:  5'- -cAUCCCGCCGAgggucaUCGgCGGGCauGGCGGc -3'
miRNA:   3'- uuUAGGGCGGUU------AGCgGCCUG--UCGCC- -5'
23203 5' -56.6 NC_005259.1 + 53259 0.66 0.712694
Target:  5'- -cGUCgCCGCCGcuGUCGCCGGuGCcGCc- -3'
miRNA:   3'- uuUAG-GGCGGU--UAGCGGCC-UGuCGcc -5'
23203 5' -56.6 NC_005259.1 + 49713 0.68 0.563127
Target:  5'- gAGAUCCgGCagauauUCGgCGGGCGGCGa -3'
miRNA:   3'- -UUUAGGgCGguu---AGCgGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 47977 0.75 0.23852
Target:  5'- ---gCCCGCgAAUaUGCCGGGCAGCGc -3'
miRNA:   3'- uuuaGGGCGgUUA-GCGGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 47625 0.66 0.691594
Target:  5'- --uUCuuGUC-GUCGCCgaGGGCAGCGa -3'
miRNA:   3'- uuuAGggCGGuUAGCGG--CCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 47291 0.81 0.088192
Target:  5'- ----aCCGCC-GUCGCCGGACAGCGa -3'
miRNA:   3'- uuuagGGCGGuUAGCGGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 45621 0.76 0.204377
Target:  5'- cGAUgCCCGCCGG--GCCGGGCAGCGc -3'
miRNA:   3'- uUUA-GGGCGGUUagCGGCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 43908 0.67 0.627301
Target:  5'- ---gCCgGCUGAUCGauGGGCAGCGa -3'
miRNA:   3'- uuuaGGgCGGUUAGCggCCUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 43809 0.67 0.616545
Target:  5'- cGAGUCCuUGCCGGgcguacCGCCGGACAcaGGg -3'
miRNA:   3'- -UUUAGG-GCGGUUa-----GCGGCCUGUcgCC- -5'
23203 5' -56.6 NC_005259.1 + 43028 0.7 0.461028
Target:  5'- cGAUgCCGCCGAgcaggcCGCCGaGCAGCGa -3'
miRNA:   3'- uUUAgGGCGGUUa-----GCGGCcUGUCGCc -5'
23203 5' -56.6 NC_005259.1 + 40452 0.67 0.647742
Target:  5'- ---gCCUGCCGGUgugguugacguacUGCCGGGCcgcGCGGu -3'
miRNA:   3'- uuuaGGGCGGUUA-------------GCGGCCUGu--CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.