Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23203 | 5' | -56.6 | NC_005259.1 | + | 66261 | 0.71 | 0.386841 |
Target: 5'- ----gCgGCCcg-CGCCGGGCGGCGGc -3' miRNA: 3'- uuuagGgCGGuuaGCGGCCUGUCGCC- -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 66632 | 0.66 | 0.723136 |
Target: 5'- -cGUCCCugGCCAccgcucggauuGcUGCCGGuCGGCGGu -3' miRNA: 3'- uuUAGGG--CGGU-----------UaGCGGCCuGUCGCC- -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 3286 | 0.69 | 0.511021 |
Target: 5'- -cGUCgCCGCC--UCGCCGGucccuCGGCGa -3' miRNA: 3'- uuUAG-GGCGGuuAGCGGCCu----GUCGCc -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 7779 | 0.69 | 0.511021 |
Target: 5'- ---cCCCGCCGAgCGCCc--CGGCGGg -3' miRNA: 3'- uuuaGGGCGGUUaGCGGccuGUCGCC- -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 7025 | 0.69 | 0.511021 |
Target: 5'- ---cCCCGCCGAgCGCCc--CGGCGGg -3' miRNA: 3'- uuuaGGGCGGUUaGCGGccuGUCGCC- -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 28224 | 0.69 | 0.490733 |
Target: 5'- -cGUgCCGCCAc-CGUCGG-CGGCGGg -3' miRNA: 3'- uuUAgGGCGGUuaGCGGCCuGUCGCC- -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 37049 | 0.7 | 0.470827 |
Target: 5'- ---gCCCGCCAc-CGCCcacGGCGGCGGu -3' miRNA: 3'- uuuaGGGCGGUuaGCGGc--CUGUCGCC- -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 43028 | 0.7 | 0.461028 |
Target: 5'- cGAUgCCGCCGAgcaggcCGCCGaGCAGCGa -3' miRNA: 3'- uUUAgGGCGGUUa-----GCGGCcUGUCGCc -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 36883 | 0.7 | 0.461028 |
Target: 5'- ---cCCgCGCCGAcgaCGCCGGugAGCGc -3' miRNA: 3'- uuuaGG-GCGGUUa--GCGGCCugUCGCc -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 25960 | 0.7 | 0.441762 |
Target: 5'- ---gCCCGCCGA-CGCCugcgaugagaccGGGCAGCGc -3' miRNA: 3'- uuuaGGGCGGUUaGCGG------------CCUGUCGCc -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 16561 | 0.71 | 0.395679 |
Target: 5'- gAGAUCCCGCCcaccgggcaGAUCGCCgaGGACAucgcccGCGa -3' miRNA: 3'- -UUUAGGGCGG---------UUAGCGG--CCUGU------CGCc -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 60372 | 1.07 | 0.001289 |
Target: 5'- gAAAUCCCGCCAAUCGCCGGACAGCGGc -3' miRNA: 3'- -UUUAGGGCGGUUAGCGGCCUGUCGCC- -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 15300 | 0.72 | 0.378134 |
Target: 5'- ----aCCGCCGAccUCGCCGcccacggucucGACGGCGGu -3' miRNA: 3'- uuuagGGCGGUU--AGCGGC-----------CUGUCGCC- -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 17763 | 0.72 | 0.378134 |
Target: 5'- ----gCCGCCGcgCGCCGGGCcgAGCGc -3' miRNA: 3'- uuuagGGCGGUuaGCGGCCUG--UCGCc -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 4981 | 0.72 | 0.344645 |
Target: 5'- cGAGUUCgGCCGAUgGCCGGGCAcuaCGGc -3' miRNA: 3'- -UUUAGGgCGGUUAgCGGCCUGUc--GCC- -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 47977 | 0.75 | 0.23852 |
Target: 5'- ---gCCCGCgAAUaUGCCGGGCAGCGc -3' miRNA: 3'- uuuaGGGCGgUUA-GCGGCCUGUCGCc -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 54483 | 0.75 | 0.226638 |
Target: 5'- -cAUCCCGCCGAgggucaUCGgCGGGCauGGCGGc -3' miRNA: 3'- uuUAGGGCGGUU------AGCgGCCUG--UCGCC- -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 33313 | 0.75 | 0.220887 |
Target: 5'- cGAUCCCGCC-GUCGgCGGuCAcGCGGa -3' miRNA: 3'- uUUAGGGCGGuUAGCgGCCuGU-CGCC- -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 45621 | 0.76 | 0.204377 |
Target: 5'- cGAUgCCCGCCGG--GCCGGGCAGCGc -3' miRNA: 3'- uUUA-GGGCGGUUagCGGCCUGUCGCc -5' |
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23203 | 5' | -56.6 | NC_005259.1 | + | 47291 | 0.81 | 0.088192 |
Target: 5'- ----aCCGCC-GUCGCCGGACAGCGa -3' miRNA: 3'- uuuagGGCGGuUAGCGGCCUGUCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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