miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23205 3' -59.1 NC_005259.1 + 58409 1.12 0.000404
Target:  5'- cCGGCGGCGAUCAGAGAUCCACCGGGCa -3'
miRNA:   3'- -GCCGCCGCUAGUCUCUAGGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 26824 0.76 0.159407
Target:  5'- cCGGCGGUGGUgcCGGGGcgGUCUGCuCGGGCa -3'
miRNA:   3'- -GCCGCCGCUA--GUCUC--UAGGUG-GCCCG- -5'
23205 3' -59.1 NC_005259.1 + 16542 0.75 0.16748
Target:  5'- gGGUGcgcccgaGCGAcCAGAGAUCCcgcccACCGGGCa -3'
miRNA:   3'- gCCGC-------CGCUaGUCUCUAGG-----UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 41502 0.73 0.251638
Target:  5'- gCGGUGGCGggCAGAccgugGAUCUGCaCGGGg -3'
miRNA:   3'- -GCCGCCGCuaGUCU-----CUAGGUG-GCCCg -5'
23205 3' -59.1 NC_005259.1 + 8779 0.72 0.284094
Target:  5'- gCGGCGGUGAugagcUCGGcccgcuuggcgaGGAUCUucucgcGCCGGGCc -3'
miRNA:   3'- -GCCGCCGCU-----AGUC------------UCUAGG------UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 1976 0.72 0.300813
Target:  5'- cCGGCGcuacacgaGCGGUCGGAGuacaacuacgcggCCAUCGGGUg -3'
miRNA:   3'- -GCCGC--------CGCUAGUCUCua-----------GGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 8655 0.71 0.312375
Target:  5'- aGGCuGUGGUCGGGcugCCACgCGGGCa -3'
miRNA:   3'- gCCGcCGCUAGUCUcuaGGUG-GCCCG- -5'
23205 3' -59.1 NC_005259.1 + 61029 0.71 0.312375
Target:  5'- uCGGUGGCGG-C-GAGGUCgACCgacGGGCg -3'
miRNA:   3'- -GCCGCCGCUaGuCUCUAGgUGG---CCCG- -5'
23205 3' -59.1 NC_005259.1 + 8370 0.71 0.319026
Target:  5'- uCGGCGGCGGccucggcaUCGGcGAgagCCucggcgaGCCGGGCc -3'
miRNA:   3'- -GCCGCCGCU--------AGUCuCUa--GG-------UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 32877 0.71 0.327298
Target:  5'- gCGcGCGGUGAUC---GAUUCACCGGGg -3'
miRNA:   3'- -GC-CGCCGCUAGucuCUAGGUGGCCCg -5'
23205 3' -59.1 NC_005259.1 + 36117 0.71 0.334955
Target:  5'- uGGUGaGCGuaagCAGuuGggCCGCCGGGCu -3'
miRNA:   3'- gCCGC-CGCua--GUCu-CuaGGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 54510 0.7 0.350659
Target:  5'- uGGCGGCGAUguGGGGU--GgCGGGUc -3'
miRNA:   3'- gCCGCCGCUAguCUCUAggUgGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 26695 0.7 0.361959
Target:  5'- aGGCGGgGAacUCGGGGuugauuuccucgaCCAUCGGGCc -3'
miRNA:   3'- gCCGCCgCU--AGUCUCua-----------GGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 19217 0.7 0.371845
Target:  5'- gGGCGGCGAcgugggacaccgagUCGGcGAUgaucgauggccgcCUGCCGGGCc -3'
miRNA:   3'- gCCGCCGCU--------------AGUCuCUA-------------GGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 57224 0.7 0.375181
Target:  5'- cCGGUugucGG-GGUCGGAGAUCCacgucguuGCCGGGa -3'
miRNA:   3'- -GCCG----CCgCUAGUCUCUAGG--------UGGCCCg -5'
23205 3' -59.1 NC_005259.1 + 8599 0.7 0.389582
Target:  5'- cCGGCGGCcugaguugcuucauGGUCaccGGAGAUCCggcgagaauGgCGGGCa -3'
miRNA:   3'- -GCCGCCG--------------CUAG---UCUCUAGG---------UgGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 62534 0.69 0.418549
Target:  5'- uCGGCcucGaCGGUCcgAGAGAUagccUCACCGGGCa -3'
miRNA:   3'- -GCCGc--C-GCUAG--UCUCUA----GGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 5342 0.69 0.435809
Target:  5'- uGGUGGUGAgauucgCAuGAGccgaccuAUCgCGCCGGGCa -3'
miRNA:   3'- gCCGCCGCUa-----GU-CUC-------UAG-GUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 7039 0.68 0.455356
Target:  5'- cCGGCGGgGuuuuUCGuugcgcGAGAUCCugucgaCGGGCg -3'
miRNA:   3'- -GCCGCCgCu---AGU------CUCUAGGug----GCCCG- -5'
23205 3' -59.1 NC_005259.1 + 23312 0.68 0.455356
Target:  5'- cCGGC-GCGGUCGGugucgccgagccGGAUUaCAUCGGGCu -3'
miRNA:   3'- -GCCGcCGCUAGUC------------UCUAG-GUGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.