miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23205 3' -59.1 NC_005259.1 + 16684 0.66 0.595512
Target:  5'- uGGuCGGCGAUCcugggcaccGAGGUgaCCGCCGaGCa -3'
miRNA:   3'- gCC-GCCGCUAGu--------CUCUA--GGUGGCcCG- -5'
23205 3' -59.1 NC_005259.1 + 60176 0.66 0.616403
Target:  5'- gGGCGGCGAaCGccugcucGA-CCgACCGGGCc -3'
miRNA:   3'- gCCGCCGCUaGUcu-----CUaGG-UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 54200 0.66 0.574735
Target:  5'- aGGCGGCGGcccuugaCGGgcuGGAU--ACCGGGCa -3'
miRNA:   3'- gCCGCCGCUa------GUC---UCUAggUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 56258 0.66 0.585106
Target:  5'- uCGGCGGCcuu--GAGcgCCGCCGcccGGCc -3'
miRNA:   3'- -GCCGCCGcuaguCUCuaGGUGGC---CCG- -5'
23205 3' -59.1 NC_005259.1 + 5006 0.66 0.605947
Target:  5'- aCGGCaaGGUGGUC-GAGAUCgAUCcGGCc -3'
miRNA:   3'- -GCCG--CCGCUAGuCUCUAGgUGGcCCG- -5'
23205 3' -59.1 NC_005259.1 + 67528 0.66 0.612218
Target:  5'- uCGGCGGCaAUCAccuugcccgcGAGAUCCucaggaugccaaCGGGUu -3'
miRNA:   3'- -GCCGCCGcUAGU----------CUCUAGGug----------GCCCG- -5'
23205 3' -59.1 NC_005259.1 + 59146 0.66 0.605947
Target:  5'- uCGGCaGCGGUgcCGGGGAgCUGCUcaGGGCg -3'
miRNA:   3'- -GCCGcCGCUA--GUCUCUaGGUGG--CCCG- -5'
23205 3' -59.1 NC_005259.1 + 23258 0.66 0.616403
Target:  5'- gGGCGGUGGcCAccauGAGcaCCaagACCGGGCg -3'
miRNA:   3'- gCCGCCGCUaGU----CUCuaGG---UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 65185 0.66 0.616403
Target:  5'- aGGCgcuGGuCGAUCAGA--UCCGgUGGGUa -3'
miRNA:   3'- gCCG---CC-GCUAGUCUcuAGGUgGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 17618 0.67 0.533744
Target:  5'- gGGCGGCGAggaCGGuuucgcaGUCCugUGGGa -3'
miRNA:   3'- gCCGCCGCUa--GUCuc-----UAGGugGCCCg -5'
23205 3' -59.1 NC_005259.1 + 66917 0.67 0.554127
Target:  5'- cCGGCaGCGcgCGGuGcUCgACCGGGg -3'
miRNA:   3'- -GCCGcCGCuaGUCuCuAGgUGGCCCg -5'
23205 3' -59.1 NC_005259.1 + 12191 0.67 0.554127
Target:  5'- cCGGaCcGUGGUCguguAGAGAUgCACCGGcGCa -3'
miRNA:   3'- -GCC-GcCGCUAG----UCUCUAgGUGGCC-CG- -5'
23205 3' -59.1 NC_005259.1 + 14958 0.67 0.554127
Target:  5'- gGGCGGCa--UGGAGGcgcauucaaggCCGCCGGGUa -3'
miRNA:   3'- gCCGCCGcuaGUCUCUa----------GGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 32555 0.67 0.533744
Target:  5'- uGGCcgccccGGCGAgcgCGGGGAUagCGuuGGGCa -3'
miRNA:   3'- gCCG------CCGCUa--GUCUCUAg-GUggCCCG- -5'
23205 3' -59.1 NC_005259.1 + 68020 0.67 0.513633
Target:  5'- gCGGCGGC-AUC-GAGAUCUcaagguugaucuGCUuGGGCg -3'
miRNA:   3'- -GCCGCCGcUAGuCUCUAGG------------UGG-CCCG- -5'
23205 3' -59.1 NC_005259.1 + 58558 0.67 0.513633
Target:  5'- aCGGCucgGGCGGUUGGgccGGAUCgcggcgcggcUGCCGGGCc -3'
miRNA:   3'- -GCCG---CCGCUAGUC---UCUAG----------GUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 67237 0.67 0.523652
Target:  5'- aCGGCGGUG--UAGGGGUUgaGCgGGGCc -3'
miRNA:   3'- -GCCGCCGCuaGUCUCUAGg-UGgCCCG- -5'
23205 3' -59.1 NC_005259.1 + 33324 0.68 0.49384
Target:  5'- uCGGCGGUcacgcggaaguGAUCGG-GGUCgaugcaAUCGGGCg -3'
miRNA:   3'- -GCCGCCG-----------CUAGUCuCUAGg-----UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 18705 0.68 0.49384
Target:  5'- aCGGCGGUcugaccucGAUCAucGggCCGCCcGGCa -3'
miRNA:   3'- -GCCGCCG--------CUAGUcuCuaGGUGGcCCG- -5'
23205 3' -59.1 NC_005259.1 + 26376 0.68 0.474402
Target:  5'- uCGGUGGCGAgccuguugcUCGcGAu-UCCgacGCCGGGCg -3'
miRNA:   3'- -GCCGCCGCU---------AGU-CUcuAGG---UGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.