miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23205 3' -59.1 NC_005259.1 + 1976 0.72 0.300813
Target:  5'- cCGGCGcuacacgaGCGGUCGGAGuacaacuacgcggCCAUCGGGUg -3'
miRNA:   3'- -GCCGC--------CGCUAGUCUCua-----------GGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 5006 0.66 0.605947
Target:  5'- aCGGCaaGGUGGUC-GAGAUCgAUCcGGCc -3'
miRNA:   3'- -GCCG--CCGCUAGuCUCUAGgUGGcCCG- -5'
23205 3' -59.1 NC_005259.1 + 5342 0.69 0.435809
Target:  5'- uGGUGGUGAgauucgCAuGAGccgaccuAUCgCGCCGGGCa -3'
miRNA:   3'- gCCGCCGCUa-----GU-CUC-------UAG-GUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 7039 0.68 0.455356
Target:  5'- cCGGCGGgGuuuuUCGuugcgcGAGAUCCugucgaCGGGCg -3'
miRNA:   3'- -GCCGCCgCu---AGU------CUCUAGGug----GCCCG- -5'
23205 3' -59.1 NC_005259.1 + 8370 0.71 0.319026
Target:  5'- uCGGCGGCGGccucggcaUCGGcGAgagCCucggcgaGCCGGGCc -3'
miRNA:   3'- -GCCGCCGCU--------AGUCuCUa--GG-------UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 8599 0.7 0.389582
Target:  5'- cCGGCGGCcugaguugcuucauGGUCaccGGAGAUCCggcgagaauGgCGGGCa -3'
miRNA:   3'- -GCCGCCG--------------CUAG---UCUCUAGG---------UgGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 8655 0.71 0.312375
Target:  5'- aGGCuGUGGUCGGGcugCCACgCGGGCa -3'
miRNA:   3'- gCCGcCGCUAGUCUcuaGGUG-GCCCG- -5'
23205 3' -59.1 NC_005259.1 + 8779 0.72 0.284094
Target:  5'- gCGGCGGUGAugagcUCGGcccgcuuggcgaGGAUCUucucgcGCCGGGCc -3'
miRNA:   3'- -GCCGCCGCU-----AGUC------------UCUAGG------UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 12191 0.67 0.554127
Target:  5'- cCGGaCcGUGGUCguguAGAGAUgCACCGGcGCa -3'
miRNA:   3'- -GCC-GcCGCUAG----UCUCUAgGUGGCC-CG- -5'
23205 3' -59.1 NC_005259.1 + 14151 0.68 0.49384
Target:  5'- uGuGCGaGCGcGUCGuguGGAUCuCGCCGGGCg -3'
miRNA:   3'- gC-CGC-CGC-UAGUc--UCUAG-GUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 14958 0.67 0.554127
Target:  5'- gGGCGGCa--UGGAGGcgcauucaaggCCGCCGGGUa -3'
miRNA:   3'- gCCGCCGcuaGUCUCUa----------GGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 16542 0.75 0.16748
Target:  5'- gGGUGcgcccgaGCGAcCAGAGAUCCcgcccACCGGGCa -3'
miRNA:   3'- gCCGC-------CGCUaGUCUCUAGG-----UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 16684 0.66 0.595512
Target:  5'- uGGuCGGCGAUCcugggcaccGAGGUgaCCGCCGaGCa -3'
miRNA:   3'- gCC-GCCGCUAGu--------CUCUA--GGUGGCcCG- -5'
23205 3' -59.1 NC_005259.1 + 17618 0.67 0.533744
Target:  5'- gGGCGGCGAggaCGGuuucgcaGUCCugUGGGa -3'
miRNA:   3'- gCCGCCGCUa--GUCuc-----UAGGugGCCCg -5'
23205 3' -59.1 NC_005259.1 + 18705 0.68 0.49384
Target:  5'- aCGGCGGUcugaccucGAUCAucGggCCGCCcGGCa -3'
miRNA:   3'- -GCCGCCG--------CUAGUcuCuaGGUGGcCCG- -5'
23205 3' -59.1 NC_005259.1 + 19217 0.7 0.371845
Target:  5'- gGGCGGCGAcgugggacaccgagUCGGcGAUgaucgauggccgcCUGCCGGGCc -3'
miRNA:   3'- gCCGCCGCU--------------AGUCuCUA-------------GGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 23258 0.66 0.616403
Target:  5'- gGGCGGUGGcCAccauGAGcaCCaagACCGGGCg -3'
miRNA:   3'- gCCGCCGCUaGU----CUCuaGG---UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 23312 0.68 0.455356
Target:  5'- cCGGC-GCGGUCGGugucgccgagccGGAUUaCAUCGGGCu -3'
miRNA:   3'- -GCCGcCGCUAGUC------------UCUAG-GUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 26376 0.68 0.474402
Target:  5'- uCGGUGGCGAgccuguugcUCGcGAu-UCCgacGCCGGGCg -3'
miRNA:   3'- -GCCGCCGCU---------AGU-CUcuAGG---UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 26695 0.7 0.361959
Target:  5'- aGGCGGgGAacUCGGGGuugauuuccucgaCCAUCGGGCc -3'
miRNA:   3'- gCCGCCgCU--AGUCUCua-----------GGUGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.