miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23205 3' -59.1 NC_005259.1 + 26824 0.76 0.159407
Target:  5'- cCGGCGGUGGUgcCGGGGcgGUCUGCuCGGGCa -3'
miRNA:   3'- -GCCGCCGCUA--GUCUC--UAGGUG-GCCCG- -5'
23205 3' -59.1 NC_005259.1 + 30132 0.68 0.503695
Target:  5'- cCGGCuGCGAuaccUCGGgcAGcUCgACCGGGCc -3'
miRNA:   3'- -GCCGcCGCU----AGUC--UCuAGgUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 32555 0.67 0.533744
Target:  5'- uGGCcgccccGGCGAgcgCGGGGAUagCGuuGGGCa -3'
miRNA:   3'- gCCG------CCGCUa--GUCUCUAg-GUggCCCG- -5'
23205 3' -59.1 NC_005259.1 + 32877 0.71 0.327298
Target:  5'- gCGcGCGGUGAUC---GAUUCACCGGGg -3'
miRNA:   3'- -GC-CGCCGCUAGucuCUAGGUGGCCCg -5'
23205 3' -59.1 NC_005259.1 + 33324 0.68 0.49384
Target:  5'- uCGGCGGUcacgcggaaguGAUCGG-GGUCgaugcaAUCGGGCg -3'
miRNA:   3'- -GCCGCCG-----------CUAGUCuCUAGg-----UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 34072 0.68 0.481163
Target:  5'- aCGGCGGCGGUguccacacgUAGGcccuguaccacaucGAgaacgugUCGCCGGGCg -3'
miRNA:   3'- -GCCGCCGCUA---------GUCU--------------CUa------GGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 36117 0.71 0.334955
Target:  5'- uGGUGaGCGuaagCAGuuGggCCGCCGGGCu -3'
miRNA:   3'- gCCGC-CGCua--GUCu-CuaGGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 41502 0.73 0.251638
Target:  5'- gCGGUGGCGggCAGAccgugGAUCUGCaCGGGg -3'
miRNA:   3'- -GCCGCCGCuaGUCU-----CUAGGUG-GCCCg -5'
23205 3' -59.1 NC_005259.1 + 51645 0.68 0.464828
Target:  5'- gCGGUaGGCGAaCGGGuugCCGCgCGGGCg -3'
miRNA:   3'- -GCCG-CCGCUaGUCUcuaGGUG-GCCCG- -5'
23205 3' -59.1 NC_005259.1 + 54200 0.66 0.574735
Target:  5'- aGGCGGCGGcccuugaCGGgcuGGAU--ACCGGGCa -3'
miRNA:   3'- gCCGCCGCUa------GUC---UCUAggUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 54510 0.7 0.350659
Target:  5'- uGGCGGCGAUguGGGGU--GgCGGGUc -3'
miRNA:   3'- gCCGCCGCUAguCUCUAggUgGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 56258 0.66 0.585106
Target:  5'- uCGGCGGCcuu--GAGcgCCGCCGcccGGCc -3'
miRNA:   3'- -GCCGCCGcuaguCUCuaGGUGGC---CCG- -5'
23205 3' -59.1 NC_005259.1 + 57224 0.7 0.375181
Target:  5'- cCGGUugucGG-GGUCGGAGAUCCacgucguuGCCGGGa -3'
miRNA:   3'- -GCCG----CCgCUAGUCUCUAGG--------UGGCCCg -5'
23205 3' -59.1 NC_005259.1 + 58409 1.12 0.000404
Target:  5'- cCGGCGGCGAUCAGAGAUCCACCGGGCa -3'
miRNA:   3'- -GCCGCCGCUAGUCUCUAGGUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 58558 0.67 0.513633
Target:  5'- aCGGCucgGGCGGUUGGgccGGAUCgcggcgcggcUGCCGGGCc -3'
miRNA:   3'- -GCCG---CCGCUAGUC---UCUAG----------GUGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 59146 0.66 0.605947
Target:  5'- uCGGCaGCGGUgcCGGGGAgCUGCUcaGGGCg -3'
miRNA:   3'- -GCCGcCGCUA--GUCUCUaGGUGG--CCCG- -5'
23205 3' -59.1 NC_005259.1 + 60176 0.66 0.616403
Target:  5'- gGGCGGCGAaCGccugcucGA-CCgACCGGGCc -3'
miRNA:   3'- gCCGCCGCUaGUcu-----CUaGG-UGGCCCG- -5'
23205 3' -59.1 NC_005259.1 + 60344 0.68 0.481163
Target:  5'- aGGCGGCGAUCAGGucgaggcccugcccGAaaUCCcgccaaucGCCGGacaGCg -3'
miRNA:   3'- gCCGCCGCUAGUCU--------------CU--AGG--------UGGCC---CG- -5'
23205 3' -59.1 NC_005259.1 + 61029 0.71 0.312375
Target:  5'- uCGGUGGCGG-C-GAGGUCgACCgacGGGCg -3'
miRNA:   3'- -GCCGCCGCUaGuCUCUAGgUGG---CCCG- -5'
23205 3' -59.1 NC_005259.1 + 62534 0.69 0.418549
Target:  5'- uCGGCcucGaCGGUCcgAGAGAUagccUCACCGGGCa -3'
miRNA:   3'- -GCCGc--C-GCUAG--UCUCUA----GGUGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.