Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23205 | 3' | -59.1 | NC_005259.1 | + | 5342 | 0.69 | 0.435809 |
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Target: 5'- uGGUGGUGAgauucgCAuGAGccgaccuAUCgCGCCGGGCa -3' miRNA: 3'- gCCGCCGCUa-----GU-CUC-------UAG-GUGGCCCG- -5' |
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| 23205 | 3' | -59.1 | NC_005259.1 | + | 7039 | 0.68 | 0.455356 |
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Target: 5'- cCGGCGGgGuuuuUCGuugcgcGAGAUCCugucgaCGGGCg -3' miRNA: 3'- -GCCGCCgCu---AGU------CUCUAGGug----GCCCG- -5' |
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| 23205 | 3' | -59.1 | NC_005259.1 | + | 23312 | 0.68 | 0.455356 |
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Target: 5'- cCGGC-GCGGUCGGugucgccgagccGGAUUaCAUCGGGCu -3' miRNA: 3'- -GCCGcCGCUAGUC------------UCUAG-GUGGCCCG- -5' |
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| 23205 | 3' | -59.1 | NC_005259.1 | + | 51645 | 0.68 | 0.464828 |
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Target: 5'- gCGGUaGGCGAaCGGGuugCCGCgCGGGCg -3' miRNA: 3'- -GCCG-CCGCUaGUCUcuaGGUG-GCCCG- -5' |
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| 23205 | 3' | -59.1 | NC_005259.1 | + | 66480 | 0.68 | 0.474402 |
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Target: 5'- uGGCGGUGGUCucgaucauGGGAuuuccuuccugUCgGCgGGGCg -3' miRNA: 3'- gCCGCCGCUAGu-------CUCU-----------AGgUGgCCCG- -5' |
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| 23205 | 3' | -59.1 | NC_005259.1 | + | 26376 | 0.68 | 0.474402 |
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Target: 5'- uCGGUGGCGAgccuguugcUCGcGAu-UCCgacGCCGGGCg -3' miRNA: 3'- -GCCGCCGCU---------AGU-CUcuAGG---UGGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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