miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23206	3'	-58.5	NC_005259.1	+	51268	0.74	0.238662
	Target:  5'- gCGGUGGUcaCGGUGCGCGGCAaGcggcagcGCCCg -3' miRNA:   3'- -GCUACCAccGCCACGCGCUGU-C-------UGGG- -5'
23206	3'	-58.5	NC_005259.1	+	57879	0.98	0.004591
	Target:  5'- uCGAU-GUGGCGGUGCGCGACAGACCCc -3' miRNA:   3'- -GCUAcCACCGCCACGCGCUGUCUGGG- -5'
23206	3'	-58.5	NC_005259.1	+	61594	0.67	0.575675
	Target:  5'- gCGGUGGgccGGUGGggucgGCGgGgaacaGCAGACCg -3' miRNA:   3'- -GCUACCa--CCGCCa----CGCgC-----UGUCUGGg -5'
23206	3'	-58.5	NC_005259.1	+	65875	0.77	0.146938
	Target:  5'- cCGGUGG-GGCGGUcaaucgGCGgGACGGuCCCg -3' miRNA:   3'- -GCUACCaCCGCCA------CGCgCUGUCuGGG- -5'
23206	3'	-58.5	NC_005259.1	+	66660	0.66	0.607004
	Target:  5'- ---cGGUcGGCGGUGCuGCGAU--GCUCa -3' miRNA:   3'- gcuaCCA-CCGCCACG-CGCUGucUGGG- -5'
23206	3'	-58.5	NC_005259.1	+	67162	0.71	0.32728
	Target:  5'- uCGAUGGUGGCGGccaUGCcGCcGAUgauGCCCg -3' miRNA:   3'- -GCUACCACCGCC---ACG-CG-CUGuc-UGGG- -5'
23206	3'	-58.5	NC_005259.1	+	68693	0.68	0.504354
	Target:  5'- uCGAUGaucgaGGCGGgcaGCGCGuCGGugCCc -3' miRNA:   3'- -GCUACca---CCGCCa--CGCGCuGUCugGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home