miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 3' -56.5 NC_005259.1 + 39876 0.66 0.740514
Target:  5'- gAGCuGCGCCCacaccgaaUCGuUGUcGCCG-CCGCc -3'
miRNA:   3'- -UCG-UGUGGG--------AGCuACAuCGGCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 37399 0.66 0.740514
Target:  5'- cGC-CGCCCaUGGUGUuguugacGCCGcCCGCc -3'
miRNA:   3'- uCGuGUGGGaGCUACAu------CGGCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 46731 0.66 0.740514
Target:  5'- gAGCACguaggugauGCCCgCGAUGgcugcGCCGACaccuGCg -3'
miRNA:   3'- -UCGUG---------UGGGaGCUACau---CGGCUGg---CG- -5'
23211 3' -56.5 NC_005259.1 + 48626 0.66 0.740514
Target:  5'- cGCACugCCUCGccG-AGaCgGGCUGCc -3'
miRNA:   3'- uCGUGugGGAGCuaCaUC-GgCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 36662 0.66 0.740514
Target:  5'- cGC-CGCCCUCGcc---GCCG-CCGCc -3'
miRNA:   3'- uCGuGUGGGAGCuacauCGGCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 3977 0.66 0.740514
Target:  5'- gAGCGguCCCgCGAgcacgcgaUGGCgGGCCGCg -3'
miRNA:   3'- -UCGUguGGGaGCUac------AUCGgCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 26709 0.66 0.719899
Target:  5'- gGGUugAuuUCCUCGAccaucgGGCCGACCuGCu -3'
miRNA:   3'- -UCGugU--GGGAGCUaca---UCGGCUGG-CG- -5'
23211 3' -56.5 NC_005259.1 + 60276 0.66 0.713646
Target:  5'- cAGCGCugCCgggcggccaucgucgUCGGUGcGGCCacgGACgGCg -3'
miRNA:   3'- -UCGUGugGG---------------AGCUACaUCGG---CUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 46426 0.66 0.709463
Target:  5'- uGUGCACCCgugaCGAUgGUGGCaaGCUGCu -3'
miRNA:   3'- uCGUGUGGGa---GCUA-CAUCGgcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 23152 0.66 0.698953
Target:  5'- uGCGagacCACCCUCGGUGUc-CCGuucaucCCGCu -3'
miRNA:   3'- uCGU----GUGGGAGCUACAucGGCu-----GGCG- -5'
23211 3' -56.5 NC_005259.1 + 46340 0.66 0.697899
Target:  5'- cGCGCACCgCUUGuagGUucugGGCCGcgauggcACCGCc -3'
miRNA:   3'- uCGUGUGG-GAGCua-CA----UCGGC-------UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 175 0.66 0.688383
Target:  5'- cGGCAcCACCgaCUCGGUcaucuauggcgcGUGGCgCGACgGCa -3'
miRNA:   3'- -UCGU-GUGG--GAGCUA------------CAUCG-GCUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 35250 0.66 0.688383
Target:  5'- uGCGCACUCgCGuUGUucgcGCCcGCCGCg -3'
miRNA:   3'- uCGUGUGGGaGCuACAu---CGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 43860 0.66 0.688383
Target:  5'- gAGCGCACCCgugaCGAcaccggcagcguUGccGCCGAcauugcCCGCg -3'
miRNA:   3'- -UCGUGUGGGa---GCU------------ACauCGGCU------GGCG- -5'
23211 3' -56.5 NC_005259.1 + 38814 0.67 0.677761
Target:  5'- cGCccGCGCCCgCGAUGaccgAGUCGAUgGCc -3'
miRNA:   3'- uCG--UGUGGGaGCUACa---UCGGCUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 14719 0.67 0.677761
Target:  5'- cAGCACGCCgcgCUCgucgccgaGAUGUAcgcGCUGGCCGg -3'
miRNA:   3'- -UCGUGUGG---GAG--------CUACAU---CGGCUGGCg -5'
23211 3' -56.5 NC_005259.1 + 55721 0.67 0.671367
Target:  5'- gAGCACcucGCCCUuguuggcaagcuuggUGGUGUcgAGaCCGugCGCa -3'
miRNA:   3'- -UCGUG---UGGGA---------------GCUACA--UC-GGCugGCG- -5'
23211 3' -56.5 NC_005259.1 + 3488 0.67 0.667098
Target:  5'- -cCACACCCUgccucacgCGAccaUGUGcGCCG-CCGCg -3'
miRNA:   3'- ucGUGUGGGA--------GCU---ACAU-CGGCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 62585 0.67 0.667098
Target:  5'- cGaccuCGCCCUCGAUGagaGGCUGugugagcugacGCCGCa -3'
miRNA:   3'- uCgu--GUGGGAGCUACa--UCGGC-----------UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 6406 0.67 0.656403
Target:  5'- aGGCgguGCCCU-GAUGUGGCcCGACCu- -3'
miRNA:   3'- -UCGug-UGGGAgCUACAUCG-GCUGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.