Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 50653 | 0.69 | 0.480987 |
Target: 5'- cGCCC-UCGGGG-CCauagGGCACCaGCg -3' miRNA: 3'- -CGGGuAGCCCCuGGcgaaCUGUGG-CG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 50700 | 0.68 | 0.539938 |
Target: 5'- uGCUCGUCGucgcgcuugagccGGGugCugGCUUGACACaGCg -3' miRNA: 3'- -CGGGUAGC-------------CCCugG--CGAACUGUGgCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 51490 | 0.66 | 0.624248 |
Target: 5'- -aCCGcCGGGGAuaGgUcGACGCCGCc -3' miRNA: 3'- cgGGUaGCCCCUggCgAaCUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 52050 | 0.69 | 0.471299 |
Target: 5'- -gCCGUCGaGGAUCGC--GACGCCGUc -3' miRNA: 3'- cgGGUAGCcCCUGGCGaaCUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 55885 | 0.66 | 0.64529 |
Target: 5'- cGCCCcgaccUCGGGGGUCGCgccggggucgcUGGCcagACCGCu -3' miRNA: 3'- -CGGGu----AGCCCCUGGCGa----------ACUG---UGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 56094 | 0.78 | 0.137731 |
Target: 5'- uGCUCGUCGGGGccACCGCgUGGcCACCGa -3' miRNA: 3'- -CGGGUAGCCCC--UGGCGaACU-GUGGCg -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 56765 | 1.12 | 0.000485 |
Target: 5'- gGCCCAUCGGGGACCGCUUGACACCGCc -3' miRNA: 3'- -CGGGUAGCCCCUGGCGAACUGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 57127 | 0.69 | 0.480987 |
Target: 5'- cGCCCAUCGgcGGGACCGagcaguagUGGCccucccacguGCCGa -3' miRNA: 3'- -CGGGUAGC--CCCUGGCga------ACUG----------UGGCg -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 57264 | 0.66 | 0.64529 |
Target: 5'- aGUCCGUUGGGcgagggauuGACCGg-UGGCACCu- -3' miRNA: 3'- -CGGGUAGCCC---------CUGGCgaACUGUGGcg -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 58685 | 0.68 | 0.510607 |
Target: 5'- uUCCAUCGcGGGGuCgGCUcGuCGCCGCc -3' miRNA: 3'- cGGGUAGC-CCCU-GgCGAaCuGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 58978 | 0.66 | 0.63477 |
Target: 5'- aGCUCGUCGGcGACggcgaGCUUGGCcuuuucACCGUu -3' miRNA: 3'- -CGGGUAGCCcCUGg----CGAACUG------UGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 59354 | 0.67 | 0.582304 |
Target: 5'- -gUCGUCGguGGGAUCGCUcuUGcgaauACGCCGCa -3' miRNA: 3'- cgGGUAGC--CCCUGGCGA--AC-----UGUGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 60432 | 0.67 | 0.603231 |
Target: 5'- gGCCCA-CGGGGcgGCCacGCccGACACCu- -3' miRNA: 3'- -CGGGUaGCCCC--UGG--CGaaCUGUGGcg -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 62162 | 0.66 | 0.624248 |
Target: 5'- aGCaCC-UCGGGGugCGCgaucucGACACguucgucaCGCa -3' miRNA: 3'- -CG-GGuAGCCCCugGCGaa----CUGUG--------GCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 63708 | 0.71 | 0.339646 |
Target: 5'- uGCCCAgCGGGGAUCGg--GGC-CUGCg -3' miRNA: 3'- -CGGGUaGCCCCUGGCgaaCUGuGGCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 66017 | 0.67 | 0.592752 |
Target: 5'- aCCC-UCGGGG-CCGCacgUGuuGCgCGCg -3' miRNA: 3'- cGGGuAGCCCCuGGCGa--ACugUG-GCG- -5' |
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23212 | 5' | -58.3 | NC_005259.1 | + | 66263 | 0.69 | 0.471299 |
Target: 5'- gGCCCGcgcCGGGcGGCgGCUc-ACGCCGCc -3' miRNA: 3'- -CGGGUa--GCCC-CUGgCGAacUGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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