miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23212 5' -58.3 NC_005259.1 + 66263 0.69 0.471299
Target:  5'- gGCCCGcgcCGGGcGGCgGCUc-ACGCCGCc -3'
miRNA:   3'- -CGGGUa--GCCC-CUGgCGAacUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 66017 0.67 0.592752
Target:  5'- aCCC-UCGGGG-CCGCacgUGuuGCgCGCg -3'
miRNA:   3'- cGGGuAGCCCCuGGCGa--ACugUG-GCG- -5'
23212 5' -58.3 NC_005259.1 + 63708 0.71 0.339646
Target:  5'- uGCCCAgCGGGGAUCGg--GGC-CUGCg -3'
miRNA:   3'- -CGGGUaGCCCCUGGCgaaCUGuGGCG- -5'
23212 5' -58.3 NC_005259.1 + 62162 0.66 0.624248
Target:  5'- aGCaCC-UCGGGGugCGCgaucucGACACguucgucaCGCa -3'
miRNA:   3'- -CG-GGuAGCCCCugGCGaa----CUGUG--------GCG- -5'
23212 5' -58.3 NC_005259.1 + 60432 0.67 0.603231
Target:  5'- gGCCCA-CGGGGcgGCCacGCccGACACCu- -3'
miRNA:   3'- -CGGGUaGCCCC--UGG--CGaaCUGUGGcg -5'
23212 5' -58.3 NC_005259.1 + 59354 0.67 0.582304
Target:  5'- -gUCGUCGguGGGAUCGCUcuUGcgaauACGCCGCa -3'
miRNA:   3'- cgGGUAGC--CCCUGGCGA--AC-----UGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 58978 0.66 0.63477
Target:  5'- aGCUCGUCGGcGACggcgaGCUUGGCcuuuucACCGUu -3'
miRNA:   3'- -CGGGUAGCCcCUGg----CGAACUG------UGGCG- -5'
23212 5' -58.3 NC_005259.1 + 58685 0.68 0.510607
Target:  5'- uUCCAUCGcGGGGuCgGCUcGuCGCCGCc -3'
miRNA:   3'- cGGGUAGC-CCCU-GgCGAaCuGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 57264 0.66 0.64529
Target:  5'- aGUCCGUUGGGcgagggauuGACCGg-UGGCACCu- -3'
miRNA:   3'- -CGGGUAGCCC---------CUGGCgaACUGUGGcg -5'
23212 5' -58.3 NC_005259.1 + 57127 0.69 0.480987
Target:  5'- cGCCCAUCGgcGGGACCGagcaguagUGGCccucccacguGCCGa -3'
miRNA:   3'- -CGGGUAGC--CCCUGGCga------ACUG----------UGGCg -5'
23212 5' -58.3 NC_005259.1 + 56765 1.12 0.000485
Target:  5'- gGCCCAUCGGGGACCGCUUGACACCGCc -3'
miRNA:   3'- -CGGGUAGCCCCUGGCGAACUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 56094 0.78 0.137731
Target:  5'- uGCUCGUCGGGGccACCGCgUGGcCACCGa -3'
miRNA:   3'- -CGGGUAGCCCC--UGGCGaACU-GUGGCg -5'
23212 5' -58.3 NC_005259.1 + 55885 0.66 0.64529
Target:  5'- cGCCCcgaccUCGGGGGUCGCgccggggucgcUGGCcagACCGCu -3'
miRNA:   3'- -CGGGu----AGCCCCUGGCGa----------ACUG---UGGCG- -5'
23212 5' -58.3 NC_005259.1 + 52050 0.69 0.471299
Target:  5'- -gCCGUCGaGGAUCGC--GACGCCGUc -3'
miRNA:   3'- cgGGUAGCcCCUGGCGaaCUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 51490 0.66 0.624248
Target:  5'- -aCCGcCGGGGAuaGgUcGACGCCGCc -3'
miRNA:   3'- cgGGUaGCCCCUggCgAaCUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 50700 0.68 0.539938
Target:  5'- uGCUCGUCGucgcgcuugagccGGGugCugGCUUGACACaGCg -3'
miRNA:   3'- -CGGGUAGC-------------CCCugG--CGAACUGUGgCG- -5'
23212 5' -58.3 NC_005259.1 + 50653 0.69 0.480987
Target:  5'- cGCCC-UCGGGG-CCauagGGCACCaGCg -3'
miRNA:   3'- -CGGGuAGCCCCuGGcgaaCUGUGG-CG- -5'
23212 5' -58.3 NC_005259.1 + 46528 0.77 0.161326
Target:  5'- aGCCgGUCGGGGAUCGCcgaGAUcuggucgccgACCGCg -3'
miRNA:   3'- -CGGgUAGCCCCUGGCGaa-CUG----------UGGCG- -5'
23212 5' -58.3 NC_005259.1 + 46347 0.69 0.480987
Target:  5'- cGCUUGUaGGuucuGGGCCGCgaUGGCACCGCc -3'
miRNA:   3'- -CGGGUAgCC----CCUGGCGa-ACUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 45749 0.68 0.537896
Target:  5'- cGCaCCGccUCGGGGaugagcacgcccucGCCGggUGccaGCACCGCg -3'
miRNA:   3'- -CG-GGU--AGCCCC--------------UGGCgaAC---UGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.