miRNA display CGI


Results 21 - 25 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23217 3' -57.4 NC_005259.1 + 60538 0.68 0.491358
Target:  5'- cCGGGACGcAGCCGcucgucGGCaugcccggUGCCGACGg -3'
miRNA:   3'- uGUCCUGUaUCGGCu-----CCG--------ACGGCUGU- -5'
23217 3' -57.4 NC_005259.1 + 68786 0.7 0.404919
Target:  5'- aGCAGGuCGUAcGCCGGGGCggUGUCGGu- -3'
miRNA:   3'- -UGUCCuGUAU-CGGCUCCG--ACGGCUgu -5'
23217 3' -57.4 NC_005259.1 + 24797 0.7 0.387043
Target:  5'- aGCAGGGCcaAGaCCGAGGUgccCCGGCAc -3'
miRNA:   3'- -UGUCCUGuaUC-GGCUCCGac-GGCUGU- -5'
23217 3' -57.4 NC_005259.1 + 15144 0.71 0.32792
Target:  5'- uACGGGGCcaccucgGUGGCCGAGGCcgagGCCauccucGACAc -3'
miRNA:   3'- -UGUCCUG-------UAUCGGCUCCGa---CGG------CUGU- -5'
23217 3' -57.4 NC_005259.1 + 54725 1.08 0.000863
Target:  5'- uACAGGACAUAGCCGAGGCUGCCGACAg -3'
miRNA:   3'- -UGUCCUGUAUCGGCUCCGACGGCUGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.