miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23217 5' -51.8 NC_005259.1 + 67773 0.7 0.73656
Target:  5'- gGCCaCCGACCaCGcgguGACCUUGUUg--GCa -3'
miRNA:   3'- -CGGcGGCUGG-GU----UUGGAACGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 63866 0.68 0.817067
Target:  5'- gGUgGCCGGCU--GGCCUUGCguggGCg -3'
miRNA:   3'- -CGgCGGCUGGguUUGGAACGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 63400 0.72 0.613645
Target:  5'- -aCGCCGACCaaugguugcCCUUGCUcAUGCc -3'
miRNA:   3'- cgGCGGCUGGguuu-----GGAACGAaUACG- -5'
23217 5' -51.8 NC_005259.1 + 61975 0.78 0.328594
Target:  5'- cGCCGCUG-CCUcGACCUUGCUc-UGCa -3'
miRNA:   3'- -CGGCGGCuGGGuUUGGAACGAauACG- -5'
23217 5' -51.8 NC_005259.1 + 61715 0.68 0.852927
Target:  5'- gGUCG-CGAUCCAcACCUUGUcgagcaggUGUGCg -3'
miRNA:   3'- -CGGCgGCUGGGUuUGGAACGa-------AUACG- -5'
23217 5' -51.8 NC_005259.1 + 60153 0.67 0.892407
Target:  5'- gGCCGCCGcCUCAGcgGCCUcacggGCg---GCg -3'
miRNA:   3'- -CGGCGGCuGGGUU--UGGAa----CGaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 58590 0.68 0.844294
Target:  5'- gGCUGCCGGgCCGGAUCUUuucgagcgccugGCUgAUGUc -3'
miRNA:   3'- -CGGCGGCUgGGUUUGGAA------------CGAaUACG- -5'
23217 5' -51.8 NC_005259.1 + 56238 0.7 0.715128
Target:  5'- cGCCGCCGACCaCGuugggaucggcGGCCUUGa----GCg -3'
miRNA:   3'- -CGGCGGCUGG-GU-----------UUGGAACgaauaCG- -5'
23217 5' -51.8 NC_005259.1 + 54759 1.13 0.001488
Target:  5'- gGCCGCCGACCCAAACCUUGCUUAUGCc -3'
miRNA:   3'- -CGGCGGCUGGGUUUGGAACGAAUACG- -5'
23217 5' -51.8 NC_005259.1 + 53392 0.7 0.757564
Target:  5'- cGCC-CCGGCCCAaaagGACCgggGCgguucUGCg -3'
miRNA:   3'- -CGGcGGCUGGGU----UUGGaa-CGaau--ACG- -5'
23217 5' -51.8 NC_005259.1 + 53247 0.75 0.445686
Target:  5'- cGCCGCCGACaCCGucGCCgccGCUgucgccgGUGCc -3'
miRNA:   3'- -CGGCGGCUG-GGUu-UGGaa-CGAa------UACG- -5'
23217 5' -51.8 NC_005259.1 + 52920 0.69 0.797909
Target:  5'- aCCGCCGACUCGAugGCCUggucGCUcaacGCc -3'
miRNA:   3'- cGGCGGCUGGGUU--UGGAa---CGAaua-CG- -5'
23217 5' -51.8 NC_005259.1 + 52370 0.69 0.807582
Target:  5'- aUCGCCGACUCAAGCg--GCUgc-GCa -3'
miRNA:   3'- cGGCGGCUGGGUUUGgaaCGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 51509 0.66 0.899518
Target:  5'- cGCCGCCGAUCUcGACgCgcgUGacCUcGUGCa -3'
miRNA:   3'- -CGGCGGCUGGGuUUG-Ga--AC--GAaUACG- -5'
23217 5' -51.8 NC_005259.1 + 49396 0.66 0.912918
Target:  5'- -aCGCCGAgCgAGACguaCUUGCUcgAUGCc -3'
miRNA:   3'- cgGCGGCUgGgUUUG---GAACGAa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 49183 0.66 0.899518
Target:  5'- cGCC-CCGAUCCGaaagGACCgggGCgguuuccgUUGUGCg -3'
miRNA:   3'- -CGGcGGCUGGGU----UUGGaa-CG--------AAUACG- -5'
23217 5' -51.8 NC_005259.1 + 48183 0.69 0.797909
Target:  5'- cGCCGCCggGugUCGGACCggGC--AUGCc -3'
miRNA:   3'- -CGGCGG--CugGGUUUGGaaCGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 47837 0.66 0.9252
Target:  5'- uGCCGCUGACggugcgagcuuuUCGAgcGCCUUGUUg--GCc -3'
miRNA:   3'- -CGGCGGCUG------------GGUU--UGGAACGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 47194 0.66 0.930919
Target:  5'- uGCCGUCGGCgaagaaCuuGCCgaGCUUcUGCu -3'
miRNA:   3'- -CGGCGGCUGg-----GuuUGGaaCGAAuACG- -5'
23217 5' -51.8 NC_005259.1 + 46978 0.7 0.73656
Target:  5'- cGCCGCCGAUgaUCGGGCCgagggUGCgccacGCg -3'
miRNA:   3'- -CGGCGGCUG--GGUUUGGa----ACGaaua-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.