miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23219 3' -54.7 NC_005259.1 + 8283 0.65 0.832225
Target:  5'- --uACCGGGugcGCGGGCAcccgcacggaaacGCCGCCUuguCGGa -3'
miRNA:   3'- auuUGGCUC---UGUCUGU-------------UGGCGGG---GCC- -5'
23219 3' -54.7 NC_005259.1 + 47941 0.66 0.824203
Target:  5'- gAAGCCGAuGACGgcggugccGAUGGCCGCCgCGc -3'
miRNA:   3'- aUUUGGCU-CUGU--------CUGUUGGCGGgGCc -5'
23219 3' -54.7 NC_005259.1 + 1910 0.66 0.824203
Target:  5'- --uGCCGAGGaAGcGC-GCCGCCCCa- -3'
miRNA:   3'- auuUGGCUCUgUC-UGuUGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 18270 0.66 0.823301
Target:  5'- cUGAACCuGAGACGaccucgacgcccGACgAGCCGCcguucugCCCGGu -3'
miRNA:   3'- -AUUUGG-CUCUGU------------CUG-UUGGCG-------GGGCC- -5'
23219 3' -54.7 NC_005259.1 + 63658 0.66 0.815103
Target:  5'- -uGGCCGGGACgccGGACAccucgggcaccGgCGCgCCGGg -3'
miRNA:   3'- auUUGGCUCUG---UCUGU-----------UgGCGgGGCC- -5'
23219 3' -54.7 NC_005259.1 + 46909 0.66 0.805817
Target:  5'- --cGCCGAG-CAGuccGCGugCGCCgCCGa -3'
miRNA:   3'- auuUGGCUCuGUC---UGUugGCGG-GGCc -5'
23219 3' -54.7 NC_005259.1 + 4221 0.66 0.796355
Target:  5'- gAGAUCGAG-CAGGCcaAGCagGCCCCGc -3'
miRNA:   3'- aUUUGGCUCuGUCUG--UUGg-CGGGGCc -5'
23219 3' -54.7 NC_005259.1 + 21386 0.66 0.796355
Target:  5'- --cGCCGAGGCGGuGCAACgCGCaugggacgCCCGu -3'
miRNA:   3'- auuUGGCUCUGUC-UGUUG-GCG--------GGGCc -5'
23219 3' -54.7 NC_005259.1 + 29187 0.66 0.796355
Target:  5'- cGAACCcguGGGGCGGAUggUuCGCCCCc- -3'
miRNA:   3'- aUUUGG---CUCUGUCUGuuG-GCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 47491 0.66 0.7954
Target:  5'- --cACCGAGGCGcGGCAggaacacGCUGCCCUc- -3'
miRNA:   3'- auuUGGCUCUGU-CUGU-------UGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 48636 0.66 0.786727
Target:  5'- --cGCCGAGACGGGCugccaGAUCGUCgCCa- -3'
miRNA:   3'- auuUGGCUCUGUCUG-----UUGGCGG-GGcc -5'
23219 3' -54.7 NC_005259.1 + 44867 0.67 0.776943
Target:  5'- cAGACCGGcGGCgAGAucCGACgCGCCCCa- -3'
miRNA:   3'- aUUUGGCU-CUG-UCU--GUUG-GCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 49991 0.67 0.776943
Target:  5'- cGGAUCGcGuGCGGACGGCUGCCCuCGu -3'
miRNA:   3'- aUUUGGCuC-UGUCUGUUGGCGGG-GCc -5'
23219 3' -54.7 NC_005259.1 + 14245 0.67 0.776943
Target:  5'- cGGGCCG-GGCAacGACGACCGugucgucaCCCCGu -3'
miRNA:   3'- aUUUGGCuCUGU--CUGUUGGC--------GGGGCc -5'
23219 3' -54.7 NC_005259.1 + 4511 0.67 0.776943
Target:  5'- --cGCCGGGAguGGCGcuGCgCGgcaCCCCGGu -3'
miRNA:   3'- auuUGGCUCUguCUGU--UG-GC---GGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 778 0.67 0.776943
Target:  5'- --cGCCGAGGCG----GCUGCCCuCGGu -3'
miRNA:   3'- auuUGGCUCUGUcuguUGGCGGG-GCC- -5'
23219 3' -54.7 NC_005259.1 + 3127 0.67 0.767013
Target:  5'- --cACCGuGggcaGCGGACGgcACCGCCCgUGGg -3'
miRNA:   3'- auuUGGCuC----UGUCUGU--UGGCGGG-GCC- -5'
23219 3' -54.7 NC_005259.1 + 26327 0.67 0.756949
Target:  5'- ---cUCGGGgucgcACAGAUAGCaCGCCCuCGGg -3'
miRNA:   3'- auuuGGCUC-----UGUCUGUUG-GCGGG-GCC- -5'
23219 3' -54.7 NC_005259.1 + 14175 0.67 0.753905
Target:  5'- --cGCCGGGcgGguGGCAACCGCUcacccccgagcaggCCGGg -3'
miRNA:   3'- auuUGGCUC--UguCUGUUGGCGG--------------GGCC- -5'
23219 3' -54.7 NC_005259.1 + 12559 0.67 0.746761
Target:  5'- --uGCCGGGGuggcccgcCAGAUccauGCCGCCCCa- -3'
miRNA:   3'- auuUGGCUCU--------GUCUGu---UGGCGGGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.