miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23219 3' -54.7 NC_005259.1 + 59496 0.67 0.746761
Target:  5'- -uAGCCGAGAguGuC-ACCGCCCgGc -3'
miRNA:   3'- auUUGGCUCUguCuGuUGGCGGGgCc -5'
23219 3' -54.7 NC_005259.1 + 12559 0.67 0.746761
Target:  5'- --uGCCGGGGuggcccgcCAGAUccauGCCGCCCCa- -3'
miRNA:   3'- auuUGGCUCU--------GUCUGu---UGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 8992 0.67 0.746761
Target:  5'- -cAGCgGcGACGG-CAGCCGCCUCGu -3'
miRNA:   3'- auUUGgCuCUGUCuGUUGGCGGGGCc -5'
23219 3' -54.7 NC_005259.1 + 48435 0.67 0.740593
Target:  5'- --cACCGAGGCgcgAGGCAgcggcagcgcguuccACCGCgCgCCGGg -3'
miRNA:   3'- auuUGGCUCUG---UCUGU---------------UGGCG-G-GGCC- -5'
23219 3' -54.7 NC_005259.1 + 34273 0.68 0.726058
Target:  5'- -cAGCCG-GAUcgaugAGugGAUCGCCCuCGGg -3'
miRNA:   3'- auUUGGCuCUG-----UCugUUGGCGGG-GCC- -5'
23219 3' -54.7 NC_005259.1 + 44995 0.68 0.722919
Target:  5'- --uGCCGAGGCaccgccgaccgccgGGGCcgcGCCGCCCUGc -3'
miRNA:   3'- auuUGGCUCUG--------------UCUGu--UGGCGGGGCc -5'
23219 3' -54.7 NC_005259.1 + 19656 0.68 0.715565
Target:  5'- --cACCGccuCGGGCAGCCGCuacaucCCCGGu -3'
miRNA:   3'- auuUGGCucuGUCUGUUGGCG------GGGCC- -5'
23219 3' -54.7 NC_005259.1 + 31236 0.68 0.704992
Target:  5'- gAGACCauuGGGCGcGGCGguGCCGCCCCa- -3'
miRNA:   3'- aUUUGGc--UCUGU-CUGU--UGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 24115 0.68 0.704992
Target:  5'- gGGACCGGGcGgGGACuacACCGCCgCCGc -3'
miRNA:   3'- aUUUGGCUC-UgUCUGu--UGGCGG-GGCc -5'
23219 3' -54.7 NC_005259.1 + 45405 0.68 0.69435
Target:  5'- --cGCCGAGcgcGCuGAUGGCCGCCgCCGc -3'
miRNA:   3'- auuUGGCUC---UGuCUGUUGGCGG-GGCc -5'
23219 3' -54.7 NC_005259.1 + 34881 0.68 0.68365
Target:  5'- cGGACCGGGGugccuCGGGCAggacggGCCGCUCgGGc -3'
miRNA:   3'- aUUUGGCUCU-----GUCUGU------UGGCGGGgCC- -5'
23219 3' -54.7 NC_005259.1 + 34539 0.69 0.662117
Target:  5'- --cACCGAGGCAGccuCAGCUuGCCgUCGGg -3'
miRNA:   3'- auuUGGCUCUGUCu--GUUGG-CGG-GGCC- -5'
23219 3' -54.7 NC_005259.1 + 40665 0.69 0.651305
Target:  5'- --cGCCGAG-CAGcGCGAgCGCCuuGGu -3'
miRNA:   3'- auuUGGCUCuGUC-UGUUgGCGGggCC- -5'
23219 3' -54.7 NC_005259.1 + 45628 0.69 0.651305
Target:  5'- --cGCCGGGcCGGGCAG-CGCgCCGGu -3'
miRNA:   3'- auuUGGCUCuGUCUGUUgGCGgGGCC- -5'
23219 3' -54.7 NC_005259.1 + 6109 0.69 0.629638
Target:  5'- --cGCCGAGGCcgAGGCcGCCGCUacgCGGg -3'
miRNA:   3'- auuUGGCUCUG--UCUGuUGGCGGg--GCC- -5'
23219 3' -54.7 NC_005259.1 + 6521 0.69 0.618804
Target:  5'- --cGCCGuGcGCGcGACAACCGgCCUCGGg -3'
miRNA:   3'- auuUGGCuC-UGU-CUGUUGGC-GGGGCC- -5'
23219 3' -54.7 NC_005259.1 + 1850 0.7 0.586403
Target:  5'- --cGCCGAGGCcgAGAaAGCCGCCgCCGc -3'
miRNA:   3'- auuUGGCUCUG--UCUgUUGGCGG-GGCc -5'
23219 3' -54.7 NC_005259.1 + 27475 0.7 0.575666
Target:  5'- gGGGCCGGGGuCGGugugGCcACCGCCCCa- -3'
miRNA:   3'- aUUUGGCUCU-GUC----UGuUGGCGGGGcc -5'
23219 3' -54.7 NC_005259.1 + 20455 0.7 0.564974
Target:  5'- cGAGCCGGGGuggcuCGGAUGACCGCCgUCGa -3'
miRNA:   3'- aUUUGGCUCU-----GUCUGUUGGCGG-GGCc -5'
23219 3' -54.7 NC_005259.1 + 52458 0.7 0.564974
Target:  5'- -cGGCgGAuGGCAGACcACCGCCCgCGa -3'
miRNA:   3'- auUUGgCU-CUGUCUGuUGGCGGG-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.