miRNA display CGI


Results 61 - 80 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23220 5' -61.6 NC_005259.1 + 11818 0.71 0.23062
Target:  5'- aGCuCGucGCUG-UCguacUGCCACCGCCGCa -3'
miRNA:   3'- -CG-GCucCGGCuAGa---GCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 43667 0.71 0.23632
Target:  5'- uGUCGuuGCCGAUCaCaCCGCCGCCGg -3'
miRNA:   3'- -CGGCucCGGCUAGaGcGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 26051 0.71 0.23632
Target:  5'- cGCCG-GGuuGGcCaUGCCGCCGCCGa -3'
miRNA:   3'- -CGGCuCCggCUaGaGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 11897 0.71 0.238633
Target:  5'- cGCCGAcagucucgcggauacGGuuGAgCUCGaaCACCGCCGCc -3'
miRNA:   3'- -CGGCU---------------CCggCUaGAGCg-GUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 8821 0.71 0.238633
Target:  5'- cGCCG-GGCCGGUgaguugacgcgCUgCGCCGaccaccacagcgugcCCGCCGCc -3'
miRNA:   3'- -CGGCuCCGGCUA-----------GA-GCGGU---------------GGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 56307 0.71 0.242137
Target:  5'- -aCGuGGCCGGaccCUCGUCGCCGUCGa -3'
miRNA:   3'- cgGCuCCGGCUa--GAGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 30834 0.71 0.244497
Target:  5'- cGCCGAGGUCGGcaacCUgcaccucaagguagcCGUCAUCGCCGUc -3'
miRNA:   3'- -CGGCUCCGGCUa---GA---------------GCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 47611 0.71 0.248073
Target:  5'- cGgCGAGGCUGAgguUCUUGUCGUCGCCGa -3'
miRNA:   3'- -CgGCUCCGGCU---AGAGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 30765 0.7 0.260305
Target:  5'- uGCCGAcGCCGGUggCaCCGCUGCCGUu -3'
miRNA:   3'- -CGGCUcCGGCUAgaGcGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 68572 0.7 0.266604
Target:  5'- aCCGAGGUgGAcCUCguauccggcgGCCACCGCaGCg -3'
miRNA:   3'- cGGCUCCGgCUaGAG----------CGGUGGCGgCG- -5'
23220 5' -61.6 NC_005259.1 + 25069 0.7 0.266604
Target:  5'- gGCaaGGGUgGcgCU-GCCACCGCCGCu -3'
miRNA:   3'- -CGgcUCCGgCuaGAgCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 37225 0.7 0.273025
Target:  5'- cGCCGGGGCgcuggcccgugcCGGaUUgGCUGCCGCCGUu -3'
miRNA:   3'- -CGGCUCCG------------GCUaGAgCGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 44361 0.7 0.273025
Target:  5'- gGCuCGuuGCCGAggCUCGCCACa-CCGCc -3'
miRNA:   3'- -CG-GCucCGGCUa-GAGCGGUGgcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 42228 0.7 0.279569
Target:  5'- cGCCGuccccGGCC-AUCUCGaCCACC-UCGCg -3'
miRNA:   3'- -CGGCu----CCGGcUAGAGC-GGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 8329 0.7 0.279569
Target:  5'- uGCCGAcggcgaucaGCCGGUCaCGCUGCUGCCGg -3'
miRNA:   3'- -CGGCUc--------CGGCUAGaGCGGUGGCGGCg -5'
23220 5' -61.6 NC_005259.1 + 2514 0.7 0.279569
Target:  5'- aGCaCGAGacccaaGCCGA---CGCCACCGCgCGCa -3'
miRNA:   3'- -CG-GCUC------CGGCUagaGCGGUGGCG-GCG- -5'
23220 5' -61.6 NC_005259.1 + 14866 0.7 0.286238
Target:  5'- -gCGAGGuUCGcgCUgcccgaGCCGCCGCCGUa -3'
miRNA:   3'- cgGCUCC-GGCuaGAg-----CGGUGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 42931 0.7 0.286238
Target:  5'- aGCaUGAGGCC---CUCGCCgugggcgagGCCGCCGUu -3'
miRNA:   3'- -CG-GCUCCGGcuaGAGCGG---------UGGCGGCG- -5'
23220 5' -61.6 NC_005259.1 + 16180 0.7 0.286238
Target:  5'- cGCCGAGGUCcaagaGAUCaUGuCCACC-CCGCc -3'
miRNA:   3'- -CGGCUCCGG-----CUAGaGC-GGUGGcGGCG- -5'
23220 5' -61.6 NC_005259.1 + 53250 0.7 0.286238
Target:  5'- cGCCGAcaCCG---UCGCCGCCGCUGUc -3'
miRNA:   3'- -CGGCUccGGCuagAGCGGUGGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.