miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23223 5' -61.5 NC_005259.1 + 67649 0.68 0.33799
Target:  5'- uGCgGUACaGCGCGCUGUCGgCuUCc -3'
miRNA:   3'- gCGgCGUGaCGCGCGACAGCgGcAGc -5'
23223 5' -61.5 NC_005259.1 + 66025 0.7 0.261791
Target:  5'- gGCCGCACguguUGCGCGCgagcucgacguagacGcCGCCGUgGg -3'
miRNA:   3'- gCGGCGUG----ACGCGCGa--------------CaGCGGCAgC- -5'
23223 5' -61.5 NC_005259.1 + 65341 0.69 0.33037
Target:  5'- aGCUGCugUGCGCGggcacGUCGCagGUCa -3'
miRNA:   3'- gCGGCGugACGCGCga---CAGCGg-CAGc -5'
23223 5' -61.5 NC_005259.1 + 64511 0.7 0.267516
Target:  5'- -uCCGCACgGCGUGCgGUCaGUCGUCa -3'
miRNA:   3'- gcGGCGUGaCGCGCGaCAG-CGGCAGc -5'
23223 5' -61.5 NC_005259.1 + 62940 0.67 0.386352
Target:  5'- gGCuCGCGCUGCuGCcgggcaccGCUGUCcUCGUCGu -3'
miRNA:   3'- gCG-GCGUGACG-CG--------CGACAGcGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 62638 0.67 0.429991
Target:  5'- -aCCGCAUUGCGUaGCUucUCGuuGUCGa -3'
miRNA:   3'- gcGGCGUGACGCG-CGAc-AGCggCAGC- -5'
23223 5' -61.5 NC_005259.1 + 61473 0.66 0.439062
Target:  5'- uGCCGauugacCUGCaCGCUGUCGCgacCGUUGa -3'
miRNA:   3'- gCGGCgu----GACGcGCGACAGCG---GCAGC- -5'
23223 5' -61.5 NC_005259.1 + 60270 0.66 0.495644
Target:  5'- gGCCaccaGCGCUGcCGgGCggccaUCGUCGUCGg -3'
miRNA:   3'- gCGG----CGUGAC-GCgCGac---AGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 58838 0.66 0.470693
Target:  5'- uCGCCGCcCUcggucucacccucggGCuCGCcGUCGUCGUCGu -3'
miRNA:   3'- -GCGGCGuGA---------------CGcGCGaCAGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 58763 0.69 0.322878
Target:  5'- gGCgaaCGaCGCUGCggGCGCUGUgCGCCgGUCGa -3'
miRNA:   3'- gCG---GC-GUGACG--CGCGACA-GCGG-CAGC- -5'
23223 5' -61.5 NC_005259.1 + 58468 0.7 0.261162
Target:  5'- gGCCacCAgUGCGUgGCUGUCGCCGaCGa -3'
miRNA:   3'- gCGGc-GUgACGCG-CGACAGCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 53246 0.7 0.280598
Target:  5'- gCGCCGCcgacaccgucGCcGC-CGCUGUCGCCGg-- -3'
miRNA:   3'- -GCGGCG----------UGaCGcGCGACAGCGGCagc -5'
23223 5' -61.5 NC_005259.1 + 52030 1.09 0.000395
Target:  5'- cCGCCGCACUGCGCGCUGUCGCCGUCGa -3'
miRNA:   3'- -GCGGCGUGACGCGCGACAGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 50686 0.66 0.448241
Target:  5'- uGCCG-ACgagGCGCUGcUCGUCGUCGc -3'
miRNA:   3'- gCGGCgUGacgCGCGAC-AGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 50018 0.66 0.457525
Target:  5'- uGCacggGCGCUGCGUaauccGCUGUgGCC-UCGa -3'
miRNA:   3'- gCGg---CGUGACGCG-----CGACAgCGGcAGC- -5'
23223 5' -61.5 NC_005259.1 + 48521 0.86 0.02068
Target:  5'- uGCCGCACUGCcgacuucucgGCGCUGUCGCCgGUCu -3'
miRNA:   3'- gCGGCGUGACG----------CGCGACAGCGG-CAGc -5'
23223 5' -61.5 NC_005259.1 + 45633 0.69 0.294183
Target:  5'- gGCCGgGCaGCGCGCcggUGcCGCCGUg- -3'
miRNA:   3'- gCGGCgUGaCGCGCG---ACaGCGGCAgc -5'
23223 5' -61.5 NC_005259.1 + 45401 0.72 0.214683
Target:  5'- uCGCCGC-CgaGCGCGCUGaUgGCCGcCGc -3'
miRNA:   3'- -GCGGCGuGa-CGCGCGAC-AgCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 45323 0.69 0.33037
Target:  5'- cCGCCGCcgaACUGCGUGgcCUG-CGCCGcCu -3'
miRNA:   3'- -GCGGCG---UGACGCGC--GACaGCGGCaGc -5'
23223 5' -61.5 NC_005259.1 + 44239 0.69 0.322878
Target:  5'- cCGCCGCGCcgcccGCGCGCgagaaGUCGgCGacaUCGa -3'
miRNA:   3'- -GCGGCGUGa----CGCGCGa----CAGCgGC---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.