miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23223 5' -61.5 NC_005259.1 + 42810 0.69 0.315513
Target:  5'- gCGCgUGCACUGUGguauUGCUGcCGCCGcCGa -3'
miRNA:   3'- -GCG-GCGUGACGC----GCGACaGCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 42179 0.68 0.33799
Target:  5'- aCGUCGaACUGUaucCGCUGcgCGCCGUCGc -3'
miRNA:   3'- -GCGGCgUGACGc--GCGACa-GCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 40559 0.74 0.154336
Target:  5'- aCGCgCGC-CcGCGCGgUGUUGCUGUCGg -3'
miRNA:   3'- -GCG-GCGuGaCGCGCgACAGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 39316 0.66 0.457525
Target:  5'- aCGcCCGCugUcGCGcCGCUGgUGaCCGUCa -3'
miRNA:   3'- -GC-GGCGugA-CGC-GCGACaGC-GGCAGc -5'
23223 5' -61.5 NC_005259.1 + 38752 0.68 0.35361
Target:  5'- cCGCCGCaggccggugaGCUGCGCGaucaUGUCGgCGa-- -3'
miRNA:   3'- -GCGGCG----------UGACGCGCg---ACAGCgGCagc -5'
23223 5' -61.5 NC_005259.1 + 38189 0.66 0.46691
Target:  5'- uCGCUGUACU-CGUagaccUUGUCGCCGUUGa -3'
miRNA:   3'- -GCGGCGUGAcGCGc----GACAGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 37357 0.7 0.280598
Target:  5'- uGCCGCugUGCGaguaGCUcaCGCCcUCGg -3'
miRNA:   3'- gCGGCGugACGCg---CGAcaGCGGcAGC- -5'
23223 5' -61.5 NC_005259.1 + 37221 0.66 0.46691
Target:  5'- cCGCCGC-CgGgGCGCUGgcccgUGCCGg-- -3'
miRNA:   3'- -GCGGCGuGaCgCGCGACa----GCGGCagc -5'
23223 5' -61.5 NC_005259.1 + 36853 0.71 0.231222
Target:  5'- aCGCCGCccGCUGCGCcguuGCUGgcaccgcccgCGCCGaCGa -3'
miRNA:   3'- -GCGGCG--UGACGCG----CGACa---------GCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 36764 0.66 0.485974
Target:  5'- gCGUgaCGUuagGCGCGUUGcCGCCGUCc -3'
miRNA:   3'- -GCG--GCGugaCGCGCGACaGCGGCAGc -5'
23223 5' -61.5 NC_005259.1 + 34715 0.66 0.495644
Target:  5'- uGCCGCGCgaGCGC-CUcGUCGgggaaaCCGUUGg -3'
miRNA:   3'- gCGGCGUGa-CGCGcGA-CAGC------GGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 31565 0.68 0.377981
Target:  5'- cCGCUGCACcGCGC-CUGaUCGUCGcCa -3'
miRNA:   3'- -GCGGCGUGaCGCGcGAC-AGCGGCaGc -5'
23223 5' -61.5 NC_005259.1 + 30698 0.71 0.225593
Target:  5'- gGCaGCACgaGCGUGUUGUUGCCGcCGa -3'
miRNA:   3'- gCGgCGUGa-CGCGCGACAGCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 28304 0.69 0.308276
Target:  5'- uGCCGCcCUGCGCaGCguagaucgGUgUGCCGUCc -3'
miRNA:   3'- gCGGCGuGACGCG-CGa-------CA-GCGGCAGc -5'
23223 5' -61.5 NC_005259.1 + 26947 0.66 0.485974
Target:  5'- aCGCCGCuGCUGgaaCGUGCgcagCGCCGUg- -3'
miRNA:   3'- -GCGGCG-UGAC---GCGCGaca-GCGGCAgc -5'
23223 5' -61.5 NC_005259.1 + 26356 0.68 0.377981
Target:  5'- gGCCGaGCUGCGCGUagaUGUCGgUGgCGa -3'
miRNA:   3'- gCGGCgUGACGCGCG---ACAGCgGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 26024 0.66 0.46691
Target:  5'- gGCCGCAa-GCGgGUUGgccagcagCGCCGcCGg -3'
miRNA:   3'- gCGGCGUgaCGCgCGACa-------GCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 23893 0.67 0.429991
Target:  5'- uGCCGCccgaGCcGcCGCGCc--CGCCGUCGa -3'
miRNA:   3'- gCGGCG----UGaC-GCGCGacaGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 22668 0.67 0.411308
Target:  5'- uCGCCgacGCACUGacCGCcgccgauuuccccGCcGUCGCCGUCa -3'
miRNA:   3'- -GCGG---CGUGAC--GCG-------------CGaCAGCGGCAGc -5'
23223 5' -61.5 NC_005259.1 + 17314 0.66 0.484051
Target:  5'- aCGCCGaGCgguaccccgaggGUGUGCcggucaacGUCGCCGUCGa -3'
miRNA:   3'- -GCGGCgUGa-----------CGCGCGa-------CAGCGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.