Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23223 | 5' | -61.5 | NC_005259.1 | + | 65341 | 0.69 | 0.33037 |
Target: 5'- aGCUGCugUGCGCGggcacGUCGCagGUCa -3' miRNA: 3'- gCGGCGugACGCGCga---CAGCGg-CAGc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 67649 | 0.68 | 0.33799 |
Target: 5'- uGCgGUACaGCGCGCUGUCGgCuUCc -3' miRNA: 3'- gCGgCGUGaCGCGCGACAGCgGcAGc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 42179 | 0.68 | 0.33799 |
Target: 5'- aCGUCGaACUGUaucCGCUGcgCGCCGUCGc -3' miRNA: 3'- -GCGGCgUGACGc--GCGACa-GCGGCAGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 38752 | 0.68 | 0.35361 |
Target: 5'- cCGCCGCaggccggugaGCUGCGCGaucaUGUCGgCGa-- -3' miRNA: 3'- -GCGGCG----------UGACGCGCg---ACAGCgGCagc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 31565 | 0.68 | 0.377981 |
Target: 5'- cCGCUGCACcGCGC-CUGaUCGUCGcCa -3' miRNA: 3'- -GCGGCGUGaCGCGcGAC-AGCGGCaGc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 26356 | 0.68 | 0.377981 |
Target: 5'- gGCCGaGCUGCGCGUagaUGUCGgUGgCGa -3' miRNA: 3'- gCGGCgUGACGCGCG---ACAGCgGCaGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 62940 | 0.67 | 0.386352 |
Target: 5'- gGCuCGCGCUGCuGCcgggcaccGCUGUCcUCGUCGu -3' miRNA: 3'- gCG-GCGUGACG-CG--------CGACAGcGGCAGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 22668 | 0.67 | 0.411308 |
Target: 5'- uCGCCgacGCACUGacCGCcgccgauuuccccGCcGUCGCCGUCa -3' miRNA: 3'- -GCGG---CGUGAC--GCG-------------CGaCAGCGGCAGc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 5518 | 0.67 | 0.421032 |
Target: 5'- gCGCCGCGCccGCaaGCUGUgGCUGcUCu -3' miRNA: 3'- -GCGGCGUGa-CGcgCGACAgCGGC-AGc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 14331 | 0.67 | 0.421032 |
Target: 5'- cCGCCGC-CcGCGUGCggGcCGCCGaCGc -3' miRNA: 3'- -GCGGCGuGaCGCGCGa-CaGCGGCaGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 23893 | 0.67 | 0.429991 |
Target: 5'- uGCCGCccgaGCcGcCGCGCc--CGCCGUCGa -3' miRNA: 3'- gCGGCG----UGaC-GCGCGacaGCGGCAGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 62638 | 0.67 | 0.429991 |
Target: 5'- -aCCGCAUUGCGUaGCUucUCGuuGUCGa -3' miRNA: 3'- gcGGCGUGACGCG-CGAc-AGCggCAGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 61473 | 0.66 | 0.439062 |
Target: 5'- uGCCGauugacCUGCaCGCUGUCGCgacCGUUGa -3' miRNA: 3'- gCGGCgu----GACGcGCGACAGCG---GCAGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 14706 | 0.66 | 0.439062 |
Target: 5'- cCGCCGCgACgaacagcacGcCGCGCUcGUCGCCGa-- -3' miRNA: 3'- -GCGGCG-UGa--------C-GCGCGA-CAGCGGCagc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 50686 | 0.66 | 0.448241 |
Target: 5'- uGCCG-ACgagGCGCUGcUCGUCGUCGc -3' miRNA: 3'- gCGGCgUGacgCGCGAC-AGCGGCAGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 39316 | 0.66 | 0.457525 |
Target: 5'- aCGcCCGCugUcGCGcCGCUGgUGaCCGUCa -3' miRNA: 3'- -GC-GGCGugA-CGC-GCGACaGC-GGCAGc -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 50018 | 0.66 | 0.457525 |
Target: 5'- uGCacggGCGCUGCGUaauccGCUGUgGCC-UCGa -3' miRNA: 3'- gCGg---CGUGACGCG-----CGACAgCGGcAGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 26024 | 0.66 | 0.46691 |
Target: 5'- gGCCGCAa-GCGgGUUGgccagcagCGCCGcCGg -3' miRNA: 3'- gCGGCGUgaCGCgCGACa-------GCGGCaGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 38189 | 0.66 | 0.46691 |
Target: 5'- uCGCUGUACU-CGUagaccUUGUCGCCGUUGa -3' miRNA: 3'- -GCGGCGUGAcGCGc----GACAGCGGCAGC- -5' |
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23223 | 5' | -61.5 | NC_005259.1 | + | 6447 | 0.66 | 0.46691 |
Target: 5'- cCGUCGCGCUGaucgGCaGC-GUCGCCGg-- -3' miRNA: 3'- -GCGGCGUGACg---CG-CGaCAGCGGCagc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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