miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23223 5' -61.5 NC_005259.1 + 31565 0.68 0.377981
Target:  5'- cCGCUGCACcGCGC-CUGaUCGUCGcCa -3'
miRNA:   3'- -GCGGCGUGaCGCGcGAC-AGCGGCaGc -5'
23223 5' -61.5 NC_005259.1 + 34715 0.66 0.495644
Target:  5'- uGCCGCGCgaGCGC-CUcGUCGgggaaaCCGUUGg -3'
miRNA:   3'- gCGGCGUGa-CGCGcGA-CAGC------GGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 36764 0.66 0.485974
Target:  5'- gCGUgaCGUuagGCGCGUUGcCGCCGUCc -3'
miRNA:   3'- -GCG--GCGugaCGCGCGACaGCGGCAGc -5'
23223 5' -61.5 NC_005259.1 + 36853 0.71 0.231222
Target:  5'- aCGCCGCccGCUGCGCcguuGCUGgcaccgcccgCGCCGaCGa -3'
miRNA:   3'- -GCGGCG--UGACGCG----CGACa---------GCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 37221 0.66 0.46691
Target:  5'- cCGCCGC-CgGgGCGCUGgcccgUGCCGg-- -3'
miRNA:   3'- -GCGGCGuGaCgCGCGACa----GCGGCagc -5'
23223 5' -61.5 NC_005259.1 + 37357 0.7 0.280598
Target:  5'- uGCCGCugUGCGaguaGCUcaCGCCcUCGg -3'
miRNA:   3'- gCGGCGugACGCg---CGAcaGCGGcAGC- -5'
23223 5' -61.5 NC_005259.1 + 38189 0.66 0.46691
Target:  5'- uCGCUGUACU-CGUagaccUUGUCGCCGUUGa -3'
miRNA:   3'- -GCGGCGUGAcGCGc----GACAGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 38752 0.68 0.35361
Target:  5'- cCGCCGCaggccggugaGCUGCGCGaucaUGUCGgCGa-- -3'
miRNA:   3'- -GCGGCG----------UGACGCGCg---ACAGCgGCagc -5'
23223 5' -61.5 NC_005259.1 + 39316 0.66 0.457525
Target:  5'- aCGcCCGCugUcGCGcCGCUGgUGaCCGUCa -3'
miRNA:   3'- -GC-GGCGugA-CGC-GCGACaGC-GGCAGc -5'
23223 5' -61.5 NC_005259.1 + 40559 0.74 0.154336
Target:  5'- aCGCgCGC-CcGCGCGgUGUUGCUGUCGg -3'
miRNA:   3'- -GCG-GCGuGaCGCGCgACAGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 42179 0.68 0.33799
Target:  5'- aCGUCGaACUGUaucCGCUGcgCGCCGUCGc -3'
miRNA:   3'- -GCGGCgUGACGc--GCGACa-GCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 42810 0.69 0.315513
Target:  5'- gCGCgUGCACUGUGguauUGCUGcCGCCGcCGa -3'
miRNA:   3'- -GCG-GCGUGACGC----GCGACaGCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 44239 0.69 0.322878
Target:  5'- cCGCCGCGCcgcccGCGCGCgagaaGUCGgCGacaUCGa -3'
miRNA:   3'- -GCGGCGUGa----CGCGCGa----CAGCgGC---AGC- -5'
23223 5' -61.5 NC_005259.1 + 45323 0.69 0.33037
Target:  5'- cCGCCGCcgaACUGCGUGgcCUG-CGCCGcCu -3'
miRNA:   3'- -GCGGCG---UGACGCGC--GACaGCGGCaGc -5'
23223 5' -61.5 NC_005259.1 + 45401 0.72 0.214683
Target:  5'- uCGCCGC-CgaGCGCGCUGaUgGCCGcCGc -3'
miRNA:   3'- -GCGGCGuGa-CGCGCGAC-AgCGGCaGC- -5'
23223 5' -61.5 NC_005259.1 + 45633 0.69 0.294183
Target:  5'- gGCCGgGCaGCGCGCcggUGcCGCCGUg- -3'
miRNA:   3'- gCGGCgUGaCGCGCG---ACaGCGGCAgc -5'
23223 5' -61.5 NC_005259.1 + 48521 0.86 0.02068
Target:  5'- uGCCGCACUGCcgacuucucgGCGCUGUCGCCgGUCu -3'
miRNA:   3'- gCGGCGUGACG----------CGCGACAGCGG-CAGc -5'
23223 5' -61.5 NC_005259.1 + 50018 0.66 0.457525
Target:  5'- uGCacggGCGCUGCGUaauccGCUGUgGCC-UCGa -3'
miRNA:   3'- gCGg---CGUGACGCG-----CGACAgCGGcAGC- -5'
23223 5' -61.5 NC_005259.1 + 50686 0.66 0.448241
Target:  5'- uGCCG-ACgagGCGCUGcUCGUCGUCGc -3'
miRNA:   3'- gCGGCgUGacgCGCGAC-AGCGGCAGC- -5'
23223 5' -61.5 NC_005259.1 + 52030 1.09 0.000395
Target:  5'- cCGCCGCACUGCGCGCUGUCGCCGUCGa -3'
miRNA:   3'- -GCGGCGUGACGCGCGACAGCGGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.