miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23225 5' -61.4 NC_005259.1 + 45602 0.68 0.381419
Target:  5'- aGCACCgacagcucggucUCGAUGC-C-CGCCgggcCGGGCa -3'
miRNA:   3'- aCGUGG------------AGCUGCGcGaGCGGa---GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 54207 0.68 0.381419
Target:  5'- gGC-CCUUGACGgGCUgGauaC-CGGGCa -3'
miRNA:   3'- aCGuGGAGCUGCgCGAgCg--GaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 58878 0.68 0.380582
Target:  5'- cGuCGCCUCGGCauCGCcgUCGucaucacCCUCGGGCu -3'
miRNA:   3'- aC-GUGGAGCUGc-GCG--AGC-------GGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 18418 0.68 0.373103
Target:  5'- cGCGCC-CGccaccuACGCGCacgaCGCCUCGuGCa -3'
miRNA:   3'- aCGUGGaGC------UGCGCGa---GCGGAGCcCG- -5'
23225 5' -61.4 NC_005259.1 + 31787 0.68 0.373103
Target:  5'- cUGCGCCUUGAC-CGCgUCGUCaUCGaGCu -3'
miRNA:   3'- -ACGUGGAGCUGcGCG-AGCGG-AGCcCG- -5'
23225 5' -61.4 NC_005259.1 + 39985 0.68 0.371455
Target:  5'- -cCACCUCGACGgGCugaUCGCCgccgagcaugaGGGUc -3'
miRNA:   3'- acGUGGAGCUGCgCG---AGCGGag---------CCCG- -5'
23225 5' -61.4 NC_005259.1 + 12297 0.68 0.364912
Target:  5'- cGCGCCUCGAUGCGg--GCaaugUCGGuGCg -3'
miRNA:   3'- aCGUGGAGCUGCGCgagCGg---AGCC-CG- -5'
23225 5' -61.4 NC_005259.1 + 66039 0.68 0.364912
Target:  5'- cGCGCgagCUCGACGUagacGC-CGCCgUGGGCc -3'
miRNA:   3'- aCGUG---GAGCUGCG----CGaGCGGaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 26669 0.68 0.356845
Target:  5'- cGCACC-CGGCGgcaGCcCGCCcaUCGaGGCg -3'
miRNA:   3'- aCGUGGaGCUGCg--CGaGCGG--AGC-CCG- -5'
23225 5' -61.4 NC_005259.1 + 19624 0.68 0.348905
Target:  5'- cUGCgguucaACCUCauugaGACGCucaccgGCacCGCCUCGGGCa -3'
miRNA:   3'- -ACG------UGGAG-----CUGCG------CGa-GCGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 56354 0.68 0.348905
Target:  5'- uUGC-CCUCGggcACGCGgUacaGCCgucgCGGGCc -3'
miRNA:   3'- -ACGuGGAGC---UGCGCgAg--CGGa---GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 14221 0.68 0.341091
Target:  5'- -cUACC-CGGCGCGCgUCGUgcguaUCGGGCc -3'
miRNA:   3'- acGUGGaGCUGCGCG-AGCGg----AGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 12981 0.69 0.311113
Target:  5'- aGCGCCcacCGugGUGCUCGCgUUCGcacucGGCu -3'
miRNA:   3'- aCGUGGa--GCugCGCGAGCG-GAGC-----CCG- -5'
23225 5' -61.4 NC_005259.1 + 60453 0.69 0.311113
Target:  5'- cGaCACCUCGAuucCGaCGCUgGUCUCGuaGGCa -3'
miRNA:   3'- aC-GUGGAGCU---GC-GCGAgCGGAGC--CCG- -5'
23225 5' -61.4 NC_005259.1 + 60144 0.69 0.311113
Target:  5'- cGCgGCCUUGGC-CGC-CGCCUcagcggccucaCGGGCg -3'
miRNA:   3'- aCG-UGGAGCUGcGCGaGCGGA-----------GCCCG- -5'
23225 5' -61.4 NC_005259.1 + 61065 0.69 0.303938
Target:  5'- uUGUGCCgggcaUCGGCauagGCGUcgUCgGCCUCGGGCu -3'
miRNA:   3'- -ACGUGG-----AGCUG----CGCG--AG-CGGAGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 43287 0.69 0.303938
Target:  5'- aGCGCCcgccgcCGACGCGCcCGCCUgaauGGCu -3'
miRNA:   3'- aCGUGGa-----GCUGCGCGaGCGGAgc--CCG- -5'
23225 5' -61.4 NC_005259.1 + 50697 0.69 0.296891
Target:  5'- cGCugCUCGucguCGCGCUUGagcCGGGUg -3'
miRNA:   3'- aCGugGAGCu---GCGCGAGCggaGCCCG- -5'
23225 5' -61.4 NC_005259.1 + 28152 0.69 0.296891
Target:  5'- cUGCccgGCCUCGACGCGCUgC-CCUUGacguaguccgguGGCg -3'
miRNA:   3'- -ACG---UGGAGCUGCGCGA-GcGGAGC------------CCG- -5'
23225 5' -61.4 NC_005259.1 + 31932 0.7 0.289972
Target:  5'- cGCACUcggggUCGAgGCGgUUaCCUCGGGUg -3'
miRNA:   3'- aCGUGG-----AGCUgCGCgAGcGGAGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.