miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23231 5' -61.6 NC_005259.1 + 45548 0.66 0.479993
Target:  5'- ----aGCGGGuugCUCGcCGGGCCACCc -3'
miRNA:   3'- cucagCGCUCug-GAGC-GCCCGGUGGc -5'
23231 5' -61.6 NC_005259.1 + 41311 0.66 0.442557
Target:  5'- uGAG-CGCGAggucGACCUCGaaaaGGGCgguGCCGu -3'
miRNA:   3'- -CUCaGCGCU----CUGGAGCg---CCCGg--UGGC- -5'
23231 5' -61.6 NC_005259.1 + 30133 0.66 0.451763
Target:  5'- cGGcUGCGAuACCUCGggcagcucgacCGGGCCGCCu -3'
miRNA:   3'- cUCaGCGCUcUGGAGC-----------GCCCGGUGGc -5'
23231 5' -61.6 NC_005259.1 + 27548 0.66 0.451763
Target:  5'- ----gGCGGGAUgUUGC-GGCCACCGa -3'
miRNA:   3'- cucagCGCUCUGgAGCGcCCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 45504 0.66 0.461074
Target:  5'- uGGUCGCuGuGGCCacCGCGccgguguuGGCCGCCGu -3'
miRNA:   3'- cUCAGCG-CuCUGGa-GCGC--------CCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 62657 0.66 0.461074
Target:  5'- -cGUUGuCGAGACCgaGCGaGGCCACg- -3'
miRNA:   3'- cuCAGC-GCUCUGGagCGC-CCGGUGgc -5'
23231 5' -61.6 NC_005259.1 + 23511 0.66 0.461074
Target:  5'- cGAGcucagCGaCGAGAUCUCGaCGGugaaaaucaGCCGCCGc -3'
miRNA:   3'- -CUCa----GC-GCUCUGGAGC-GCC---------CGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 6103 0.66 0.466709
Target:  5'- cGAGaUCGcCGAGGCCgaggccgccgcuaCGCGGGCaCugCa -3'
miRNA:   3'- -CUC-AGC-GCUCUGGa------------GCGCCCG-GugGc -5'
23231 5' -61.6 NC_005259.1 + 45397 0.66 0.470485
Target:  5'- gGGGUCGCc--GCCgagCGCGcugauGGCCGCCGc -3'
miRNA:   3'- -CUCAGCGcucUGGa--GCGC-----CCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 48476 0.66 0.470485
Target:  5'- cGGGUCGCGucGGCCUguuccucgacgCGCuugaGGGCCGCg- -3'
miRNA:   3'- -CUCAGCGCu-CUGGA-----------GCG----CCCGGUGgc -5'
23231 5' -61.6 NC_005259.1 + 23346 0.66 0.470485
Target:  5'- cGGG-CuCGAGGCUgccUGCGaGGCCGCCGa -3'
miRNA:   3'- -CUCaGcGCUCUGGa--GCGC-CCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 56361 0.66 0.470485
Target:  5'- cGGGcaCGCGGuacaGCCgUCGCGGGCCGCg- -3'
miRNA:   3'- -CUCa-GCGCUc---UGG-AGCGCCCGGUGgc -5'
23231 5' -61.6 NC_005259.1 + 12011 0.66 0.479038
Target:  5'- aGAGUCG-GuGGCCUuguacggUGCGGGCggcaACCGg -3'
miRNA:   3'- -CUCAGCgCuCUGGA-------GCGCCCGg---UGGC- -5'
23231 5' -61.6 NC_005259.1 + 14565 0.67 0.398179
Target:  5'- cGAG-CG-GGGACCggcgaacaccaUCGCGcuGGCCACCGa -3'
miRNA:   3'- -CUCaGCgCUCUGG-----------AGCGC--CCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 31280 0.67 0.433457
Target:  5'- cGGUgGCGAGAUCUUGCccGGUCugCGc -3'
miRNA:   3'- cUCAgCGCUCUGGAGCGc-CCGGugGC- -5'
23231 5' -61.6 NC_005259.1 + 40063 0.67 0.423574
Target:  5'- cGGUCGCGAuGACC-CaUGGGCCgacgcgcACCGa -3'
miRNA:   3'- cUCAGCGCU-CUGGaGcGCCCGG-------UGGC- -5'
23231 5' -61.6 NC_005259.1 + 58288 0.67 0.415589
Target:  5'- aGGuUCGCGAGGCCa-GCGGauaCCGCCa -3'
miRNA:   3'- cUC-AGCGCUCUGGagCGCCc--GGUGGc -5'
23231 5' -61.6 NC_005259.1 + 55876 0.67 0.415589
Target:  5'- cGAGcgccUCGCcccGACCUCGgGGGUCgcGCCGg -3'
miRNA:   3'- -CUC----AGCGcu-CUGGAGCgCCCGG--UGGC- -5'
23231 5' -61.6 NC_005259.1 + 17819 0.67 0.406826
Target:  5'- uGAGcUCaGCGAGGCCaUCGaCGGGUgGgCCGa -3'
miRNA:   3'- -CUC-AG-CGCUCUGG-AGC-GCCCGgU-GGC- -5'
23231 5' -61.6 NC_005259.1 + 37522 0.67 0.398179
Target:  5'- ---cCGaCGAGAagaUCGuCGGGCCGCCGu -3'
miRNA:   3'- cucaGC-GCUCUgg-AGC-GCCCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.