miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23231 5' -61.6 NC_005259.1 + 5956 0.72 0.206423
Target:  5'- ----aGCGGGACUUCuGCGGGCCgACCa -3'
miRNA:   3'- cucagCGCUCUGGAG-CGCCCGG-UGGc -5'
23231 5' -61.6 NC_005259.1 + 6103 0.66 0.466709
Target:  5'- cGAGaUCGcCGAGGCCgaggccgccgcuaCGCGGGCaCugCa -3'
miRNA:   3'- -CUC-AGC-GCUCUGGa------------GCGCCCG-GugGc -5'
23231 5' -61.6 NC_005259.1 + 7664 0.67 0.398179
Target:  5'- -cGUCGUGAGcgccccGCCUCGUGgGGUgGCCc -3'
miRNA:   3'- cuCAGCGCUC------UGGAGCGC-CCGgUGGc -5'
23231 5' -61.6 NC_005259.1 + 8387 0.7 0.263773
Target:  5'- --aUCgGCGAGAgCCUCGgcgagcCGGGCCACCu -3'
miRNA:   3'- cucAG-CGCUCU-GGAGC------GCCCGGUGGc -5'
23231 5' -61.6 NC_005259.1 + 9516 0.7 0.283337
Target:  5'- -cGUCGCGcgcgucGACCgcCGcCGGGUCACCGg -3'
miRNA:   3'- cuCAGCGCu-----CUGGa-GC-GCCCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 12011 0.66 0.479038
Target:  5'- aGAGUCG-GuGGCCUuguacggUGCGGGCggcaACCGg -3'
miRNA:   3'- -CUCAGCgCuCUGGA-------GCGCCCGg---UGGC- -5'
23231 5' -61.6 NC_005259.1 + 13213 0.68 0.333401
Target:  5'- cGGGgccaGCGguGGGCCUCGaCcGGCCACCGu -3'
miRNA:   3'- -CUCag--CGC--UCUGGAGC-GcCCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 14565 0.67 0.398179
Target:  5'- cGAG-CG-GGGACCggcgaacaccaUCGCGcuGGCCACCGa -3'
miRNA:   3'- -CUCaGCgCUCUGG-----------AGCGC--CCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 17819 0.67 0.406826
Target:  5'- uGAGcUCaGCGAGGCCaUCGaCGGGUgGgCCGa -3'
miRNA:   3'- -CUC-AG-CGCUCUGG-AGC-GCCCGgU-GGC- -5'
23231 5' -61.6 NC_005259.1 + 18690 0.68 0.35676
Target:  5'- aGGGUCugcuugagcacgGCGGucuGACCUCGaucauCGGGCCGCCc -3'
miRNA:   3'- -CUCAG------------CGCU---CUGGAGC-----GCCCGGUGGc -5'
23231 5' -61.6 NC_005259.1 + 19236 0.68 0.381245
Target:  5'- cGAGUCgGCGAugaucgauGGCCgccUGcCGGGCCGCCc -3'
miRNA:   3'- -CUCAG-CGCU--------CUGGa--GC-GCCCGGUGGc -5'
23231 5' -61.6 NC_005259.1 + 22925 0.68 0.35676
Target:  5'- --cUCGUGcucGACCUCGcCGGGUCAUCGc -3'
miRNA:   3'- cucAGCGCu--CUGGAGC-GCCCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 23346 0.66 0.470485
Target:  5'- cGGG-CuCGAGGCUgccUGCGaGGCCGCCGa -3'
miRNA:   3'- -CUCaGcGCUCUGGa--GCGC-CCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 23511 0.66 0.461074
Target:  5'- cGAGcucagCGaCGAGAUCUCGaCGGugaaaaucaGCCGCCGc -3'
miRNA:   3'- -CUCa----GC-GCUCUGGAGC-GCC---------CGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 27548 0.66 0.451763
Target:  5'- ----gGCGGGAUgUUGC-GGCCACCGa -3'
miRNA:   3'- cucagCGCUCUGgAGCGcCCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 27904 0.72 0.19145
Target:  5'- gGGGUCGcCGAGACCgCGCGGGUggUAgCGg -3'
miRNA:   3'- -CUCAGC-GCUCUGGaGCGCCCG--GUgGC- -5'
23231 5' -61.6 NC_005259.1 + 29909 0.68 0.348848
Target:  5'- gGGGUgGCugcccGAGACCaucgaCGCGuGGCCGCCa -3'
miRNA:   3'- -CUCAgCG-----CUCUGGa----GCGC-CCGGUGGc -5'
23231 5' -61.6 NC_005259.1 + 30133 0.66 0.451763
Target:  5'- cGGcUGCGAuACCUCGggcagcucgacCGGGCCGCCu -3'
miRNA:   3'- cUCaGCGCUcUGGAGC-----------GCCCGGUGGc -5'
23231 5' -61.6 NC_005259.1 + 31280 0.67 0.433457
Target:  5'- cGGUgGCGAGAUCUUGCccGGUCugCGc -3'
miRNA:   3'- cUCAgCGCUCUGGAGCGc-CCGGugGC- -5'
23231 5' -61.6 NC_005259.1 + 33588 0.71 0.226273
Target:  5'- -cGUCGCGGGccACCgaggCGCGgucgagcugcaaccGGCCACCGa -3'
miRNA:   3'- cuCAGCGCUC--UGGa---GCGC--------------CCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.