miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23231 5' -61.6 NC_005259.1 + 63920 0.7 0.276691
Target:  5'- aGGUCGCGAuuGAaCUCGUGGGUCuuACCGu -3'
miRNA:   3'- cUCAGCGCU--CUgGAGCGCCCGG--UGGC- -5'
23231 5' -61.6 NC_005259.1 + 62657 0.66 0.461074
Target:  5'- -cGUUGuCGAGACCgaGCGaGGCCACg- -3'
miRNA:   3'- cuCAGC-GCUCUGGagCGC-CCGGUGgc -5'
23231 5' -61.6 NC_005259.1 + 61944 0.69 0.325868
Target:  5'- ---gCGCGGGugC-CG-GGGCCACCGc -3'
miRNA:   3'- cucaGCGCUCugGaGCgCCCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 61412 0.7 0.275377
Target:  5'- --cUCGCGGGcacggacaacacCCUUGCGGGCgCGCCGg -3'
miRNA:   3'- cucAGCGCUCu-----------GGAGCGCCCG-GUGGC- -5'
23231 5' -61.6 NC_005259.1 + 60850 0.8 0.055153
Target:  5'- aGGUCGCGAGA-CUCGCGGGUCGCg- -3'
miRNA:   3'- cUCAGCGCUCUgGAGCGCCCGGUGgc -5'
23231 5' -61.6 NC_005259.1 + 58288 0.67 0.415589
Target:  5'- aGGuUCGCGAGGCCa-GCGGauaCCGCCa -3'
miRNA:   3'- cUC-AGCGCUCUGGagCGCCc--GGUGGc -5'
23231 5' -61.6 NC_005259.1 + 56361 0.66 0.470485
Target:  5'- cGGGcaCGCGGuacaGCCgUCGCGGGCCGCg- -3'
miRNA:   3'- -CUCa-GCGCUc---UGG-AGCGCCCGGUGgc -5'
23231 5' -61.6 NC_005259.1 + 56096 0.73 0.182005
Target:  5'- --cUCGuCGGGGCCacCGCGuGGCCACCGa -3'
miRNA:   3'- cucAGC-GCUCUGGa-GCGC-CCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 55876 0.67 0.415589
Target:  5'- cGAGcgccUCGCcccGACCUCGgGGGUCgcGCCGg -3'
miRNA:   3'- -CUC----AGCGcu-CUGGAGCgCCCGG--UGGC- -5'
23231 5' -61.6 NC_005259.1 + 48476 0.66 0.470485
Target:  5'- cGGGUCGCGucGGCCUguuccucgacgCGCuugaGGGCCGCg- -3'
miRNA:   3'- -CUCAGCGCu-CUGGA-----------GCG----CCCGGUGgc -5'
23231 5' -61.6 NC_005259.1 + 47809 1.07 0.000535
Target:  5'- uGAGUCGCGAGACCUCGCGGGCCACCGc -3'
miRNA:   3'- -CUCAGCGCUCUGGAGCGCCCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 45548 0.66 0.479993
Target:  5'- ----aGCGGGuugCUCGcCGGGCCACCc -3'
miRNA:   3'- cucagCGCUCug-GAGC-GCCCGGUGGc -5'
23231 5' -61.6 NC_005259.1 + 45504 0.66 0.461074
Target:  5'- uGGUCGCuGuGGCCacCGCGccgguguuGGCCGCCGu -3'
miRNA:   3'- cUCAGCG-CuCUGGa-GCGC--------CCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 45397 0.66 0.470485
Target:  5'- gGGGUCGCc--GCCgagCGCGcugauGGCCGCCGc -3'
miRNA:   3'- -CUCAGCGcucUGGa--GCGC-----CCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 45334 0.68 0.381245
Target:  5'- ---cUGCGuGGCCUgCGCcgccuGGGCCGCCGc -3'
miRNA:   3'- cucaGCGCuCUGGA-GCG-----CCCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 41662 0.68 0.348848
Target:  5'- cGGUgaGCGGGAUCUgcaccgcgUGCGuGGCCACCGc -3'
miRNA:   3'- cUCAg-CGCUCUGGA--------GCGC-CCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 41311 0.66 0.442557
Target:  5'- uGAG-CGCGAggucGACCUCGaaaaGGGCgguGCCGu -3'
miRNA:   3'- -CUCaGCGCU----CUGGAGCg---CCCGg--UGGC- -5'
23231 5' -61.6 NC_005259.1 + 40063 0.67 0.423574
Target:  5'- cGGUCGCGAuGACC-CaUGGGCCgacgcgcACCGa -3'
miRNA:   3'- cUCAGCGCU-CUGGaGcGCCCGG-------UGGC- -5'
23231 5' -61.6 NC_005259.1 + 37522 0.67 0.398179
Target:  5'- ---cCGaCGAGAagaUCGuCGGGCCGCCGu -3'
miRNA:   3'- cucaGC-GCUCUgg-AGC-GCCCGGUGGC- -5'
23231 5' -61.6 NC_005259.1 + 33588 0.71 0.226273
Target:  5'- -cGUCGCGGGccACCgaggCGCGgucgagcugcaaccGGCCACCGa -3'
miRNA:   3'- cuCAGCGCUC--UGGa---GCGC--------------CCGGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.