miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23235 3' -62.7 NC_005259.1 + 44688 0.66 0.42791
Target:  5'- gUGGC-CCGCauaUGGCCCgCGUCcCACcCg -3'
miRNA:   3'- -ACCGuGGCGg--GCCGGG-GUAGaGUGcG- -5'
23235 3' -62.7 NC_005259.1 + 1376 0.66 0.42791
Target:  5'- -cGCGCCGCCCgcgaGGCCCgCGcaugagccUCUCAUa- -3'
miRNA:   3'- acCGUGGCGGG----CCGGG-GU--------AGAGUGcg -5'
23235 3' -62.7 NC_005259.1 + 11444 0.66 0.42791
Target:  5'- gGGCcgcucgcuGCCGCCgGuGCCUauCGUCUCGCa- -3'
miRNA:   3'- aCCG--------UGGCGGgC-CGGG--GUAGAGUGcg -5'
23235 3' -62.7 NC_005259.1 + 4682 0.66 0.42791
Target:  5'- cUGGCucggGCCgacaGCUCGGCCCCGUggugcgaugaC-CGCGCc -3'
miRNA:   3'- -ACCG----UGG----CGGGCCGGGGUA----------GaGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 51217 0.66 0.42791
Target:  5'- cGGUagaucACCGCCggaucguaGGCCCgGUacgUCACGCc -3'
miRNA:   3'- aCCG-----UGGCGGg-------CCGGGgUAg--AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 7429 0.66 0.419
Target:  5'- cGGCGgUGCCCGcGCCgCAUggCAgCGCc -3'
miRNA:   3'- aCCGUgGCGGGC-CGGgGUAgaGU-GCG- -5'
23235 3' -62.7 NC_005259.1 + 27409 0.66 0.410205
Target:  5'- cGGCGgCaGCUCGGUgCCCGcgaggaauuggCUCACGCg -3'
miRNA:   3'- aCCGUgG-CGGGCCG-GGGUa----------GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 47765 0.66 0.410205
Target:  5'- cGGCugCGCgaUGGCCUUuuggaaaUCGCGCa -3'
miRNA:   3'- aCCGugGCGg-GCCGGGGuag----AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 12321 0.66 0.401524
Target:  5'- gUGcGCACCGCC--GCCag--CUCACGCa -3'
miRNA:   3'- -AC-CGUGGCGGgcCGGgguaGAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 3143 0.66 0.396373
Target:  5'- cGGCACCGCCCgugggacuacacGGUgaugCCCggcgaugucaaggucGUCggugCGCGCa -3'
miRNA:   3'- aCCGUGGCGGG------------CCG----GGG---------------UAGa---GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 53205 0.66 0.392962
Target:  5'- cGGCGaucagauucgcgUCGCCCGcGCCCUgcuugaggUUCGCGCc -3'
miRNA:   3'- aCCGU------------GGCGGGC-CGGGGua------GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 20490 0.66 0.392962
Target:  5'- cGaCACCGCCCGGCagCUCAUCg-GCGa -3'
miRNA:   3'- aCcGUGGCGGGCCG--GGGUAGagUGCg -5'
23235 3' -62.7 NC_005259.1 + 66258 0.66 0.384519
Target:  5'- -aGCGCgGCCCGcGCCgggCGgcggCUCACGCc -3'
miRNA:   3'- acCGUGgCGGGC-CGGg--GUa---GAGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 66745 0.66 0.376198
Target:  5'- aGGCugauGCUGCCCGGCCUgccaGUCgacCGCc -3'
miRNA:   3'- aCCG----UGGCGGGCCGGGg---UAGaguGCG- -5'
23235 3' -62.7 NC_005259.1 + 59905 0.66 0.376198
Target:  5'- uUGGUGCCGaCacaGuGCCCCGUCcauaccaagCACGCg -3'
miRNA:   3'- -ACCGUGGCgGg--C-CGGGGUAGa--------GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 4800 0.67 0.367998
Target:  5'- aGGUACUGCCCGaGCUgCCAgacgUUGCGCc -3'
miRNA:   3'- aCCGUGGCGGGC-CGG-GGUag--AGUGCG- -5'
23235 3' -62.7 NC_005259.1 + 66184 0.67 0.367998
Target:  5'- cGGCACCGCugCCGGUgCaguacggGUCagGCGCg -3'
miRNA:   3'- aCCGUGGCG--GGCCGgGg------UAGagUGCG- -5'
23235 3' -62.7 NC_005259.1 + 42640 0.67 0.359922
Target:  5'- aGGCACC--UCGGCCCCGaugugggCggcCACGCg -3'
miRNA:   3'- aCCGUGGcgGGCCGGGGUa------Ga--GUGCG- -5'
23235 3' -62.7 NC_005259.1 + 7279 0.67 0.351971
Target:  5'- cGGCuACCGCCCcGCCCCcaagCACu- -3'
miRNA:   3'- aCCG-UGGCGGGcCGGGGuagaGUGcg -5'
23235 3' -62.7 NC_005259.1 + 9710 0.67 0.344145
Target:  5'- gGGCACCGuCCuCGGgCCgGUCgagCuCGCc -3'
miRNA:   3'- aCCGUGGC-GG-GCCgGGgUAGa--GuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.