Results 1 - 20 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23238 | 3' | -64.2 | NC_005259.1 | + | 44736 | 1.1 | 0.000179 |
Target: 5'- aGCGCGCCCUCGACCGCGCCGAGGCUCu -3' miRNA: 3'- -CGCGCGGGAGCUGGCGCGGCUCCGAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 46562 | 0.77 | 0.060103 |
Target: 5'- cCGCGCCUauggucgcggcgUCGACCGCGCCgcccGAGGCg- -3' miRNA: 3'- cGCGCGGG------------AGCUGGCGCGG----CUCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 36662 | 0.77 | 0.061738 |
Target: 5'- cGC-CGCCCUCGccGCCGcCGCCGGGGuCUUg -3' miRNA: 3'- -CGcGCGGGAGC--UGGC-GCGGCUCC-GAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 766 | 0.76 | 0.074447 |
Target: 5'- cCGCGUCC---ACCGCGCCGAGGCg- -3' miRNA: 3'- cGCGCGGGagcUGGCGCGGCUCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 36439 | 0.75 | 0.082801 |
Target: 5'- aGCGuCGCCgaggUCGACCGCGUCGAGGgUg -3' miRNA: 3'- -CGC-GCGGg---AGCUGGCGCGGCUCCgAg -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 45162 | 0.75 | 0.0848 |
Target: 5'- gGC-CGCCCUUGGCCuuguugcGCGCCGAGGUc- -3' miRNA: 3'- -CGcGCGGGAGCUGG-------CGCGGCUCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 35266 | 0.75 | 0.085025 |
Target: 5'- uCGCGCCC---GCCGCGCCGGGGUc- -3' miRNA: 3'- cGCGCGGGagcUGGCGCGGCUCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 9554 | 0.73 | 0.110614 |
Target: 5'- uGCcCGgCCUCGACCGCGUCGgcgaGGuGCUCg -3' miRNA: 3'- -CGcGCgGGAGCUGGCGCGGC----UC-CGAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 1687 | 0.72 | 0.12927 |
Target: 5'- uGCGCGCCCgcaagCGcgaacucaagcGCCGCcucGCCGAGGUg- -3' miRNA: 3'- -CGCGCGGGa----GC-----------UGGCG---CGGCUCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 37198 | 0.72 | 0.13611 |
Target: 5'- uGCG-GCCCUUGccgccaccgccGCCGcCGCCGGGGCg- -3' miRNA: 3'- -CGCgCGGGAGC-----------UGGC-GCGGCUCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 40348 | 0.71 | 0.150412 |
Target: 5'- uCGCG-CCUCGAugaugaaCCGCGCCGAGgGCa- -3' miRNA: 3'- cGCGCgGGAGCU-------GGCGCGGCUC-CGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 60521 | 0.71 | 0.17553 |
Target: 5'- aGUGCGCCa-UGGCCGgGCCGGGacgcagccGCUCg -3' miRNA: 3'- -CGCGCGGgaGCUGGCgCGGCUC--------CGAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 46945 | 0.71 | 0.166908 |
Target: 5'- cCGCGCCgC-CGACCGCGuuGAG-CUUg -3' miRNA: 3'- cGCGCGG-GaGCUGGCGCggCUCcGAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 60142 | 0.71 | 0.166908 |
Target: 5'- uGCGCGgCCUUGGCCGCcGCCucagcGGcCUCa -3' miRNA: 3'- -CGCGCgGGAGCUGGCG-CGGcu---CC-GAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 55878 | 0.71 | 0.162741 |
Target: 5'- aGCGCcucGCCC-CGACCucgggggucGCGCCGGGGUc- -3' miRNA: 3'- -CGCG---CGGGaGCUGG---------CGCGGCUCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 29685 | 0.71 | 0.162741 |
Target: 5'- aCGCGCCgcaaUCGAgaCCGaUGCCGAGGCa- -3' miRNA: 3'- cGCGCGGg---AGCU--GGC-GCGGCUCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 40560 | 0.71 | 0.162741 |
Target: 5'- cGCGCGCCCgcgCGGugUUGCuGUCGGcGGCUCg -3' miRNA: 3'- -CGCGCGGGa--GCU--GGCG-CGGCU-CCGAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 31783 | 0.71 | 0.158667 |
Target: 5'- uGUGCuGCgCCUUGACCGCGUCGucaucGaGCUCg -3' miRNA: 3'- -CGCG-CG-GGAGCUGGCGCGGCu----C-CGAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 35868 | 0.71 | 0.154686 |
Target: 5'- cCGCGUCCacCGcaGCCGcCGCCGAGGCa- -3' miRNA: 3'- cGCGCGGGa-GC--UGGC-GCGGCUCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 52164 | 0.71 | 0.154686 |
Target: 5'- aGCGCcgagGCgCUCaugcagcagGACCGCGCCGAcaacgcacGGCUCa -3' miRNA: 3'- -CGCG----CGgGAG---------CUGGCGCGGCU--------CCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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