miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23238 3' -64.2 NC_005259.1 + 33139 0.66 0.326698
Target:  5'- cGCGCGUgaucuugCCguaGACCGC-CUGAGGCa- -3'
miRNA:   3'- -CGCGCG-------GGag-CUGGCGcGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 26799 0.66 0.326698
Target:  5'- aGCGCcgccGCCCggUUGGCCgguaccggcggugGUGCCGGGGCg- -3'
miRNA:   3'- -CGCG----CGGG--AGCUGG-------------CGCGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 49656 0.67 0.320108
Target:  5'- -gGCGgCCUCGAUaCGCGCCu--GCUCg -3'
miRNA:   3'- cgCGCgGGAGCUG-GCGCGGcucCGAG- -5'
23238 3' -64.2 NC_005259.1 + 45767 0.67 0.320108
Target:  5'- aGCaCGCCCUCGccgggugccagcACCGCGuuGAcGGUg- -3'
miRNA:   3'- -CGcGCGGGAGC------------UGGCGCggCU-CCGag -5'
23238 3' -64.2 NC_005259.1 + 46837 0.67 0.320108
Target:  5'- -aGCGCCCcggCGAgcugcccgaguCCGCugucgGUCGAGGCUUg -3'
miRNA:   3'- cgCGCGGGa--GCU-----------GGCG-----CGGCUCCGAG- -5'
23238 3' -64.2 NC_005259.1 + 39326 0.67 0.315769
Target:  5'- uCGCGCCgcuggugaccgucaaCUCGACCacgacGUGCCGGGcCUCg -3'
miRNA:   3'- cGCGCGG---------------GAGCUGG-----CGCGGCUCcGAG- -5'
23238 3' -64.2 NC_005259.1 + 37372 0.67 0.312902
Target:  5'- aGCucaCGCCCUCGgcaccgcccGCCGCGCCGcccauGGUg- -3'
miRNA:   3'- -CGc--GCGGGAGC---------UGGCGCGGCu----CCGag -5'
23238 3' -64.2 NC_005259.1 + 13448 0.67 0.312902
Target:  5'- gGCGUGaCCgUCGGCgCgGCGCUGGuGCUCa -3'
miRNA:   3'- -CGCGC-GGgAGCUG-G-CGCGGCUcCGAG- -5'
23238 3' -64.2 NC_005259.1 + 44887 0.67 0.312188
Target:  5'- aCGCGCCCcaCGAguauuuuCCGCGCUGuGGGC-Cg -3'
miRNA:   3'- cGCGCGGGa-GCU-------GGCGCGGC-UCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 1578 0.67 0.30582
Target:  5'- aGCGCGCCCcacACCGagGUCGAGGUc- -3'
miRNA:   3'- -CGCGCGGGagcUGGCg-CGGCUCCGag -5'
23238 3' -64.2 NC_005259.1 + 38852 0.67 0.30582
Target:  5'- aGCGCGUUCUCGAUguucgaCGCGCCcgcaauGGCg- -3'
miRNA:   3'- -CGCGCGGGAGCUG------GCGCGGcu----CCGag -5'
23238 3' -64.2 NC_005259.1 + 39905 0.67 0.30582
Target:  5'- cGC-CGCCCgccUCGauccgucgaggGCCGCGUCGAGGUcgUCc -3'
miRNA:   3'- -CGcGCGGG---AGC-----------UGGCGCGGCUCCG--AG- -5'
23238 3' -64.2 NC_005259.1 + 22178 0.67 0.300936
Target:  5'- aGCGCGCCCaucgugguugcgaccUUGcagacguuggccACCGCGCaccgccgCGAGGCUg -3'
miRNA:   3'- -CGCGCGGG---------------AGC------------UGGCGCG-------GCUCCGAg -5'
23238 3' -64.2 NC_005259.1 + 7438 0.67 0.292027
Target:  5'- cCGCGCCgCaUGGCaGCGCCGAggauGGCUUg -3'
miRNA:   3'- cGCGCGG-GaGCUGgCGCGGCU----CCGAG- -5'
23238 3' -64.2 NC_005259.1 + 11710 0.67 0.292027
Target:  5'- -aGCauuCCCUgGGCCaCGgCGAGGCUCa -3'
miRNA:   3'- cgCGc--GGGAgCUGGcGCgGCUCCGAG- -5'
23238 3' -64.2 NC_005259.1 + 35604 0.67 0.285315
Target:  5'- gGUGCGUCCUgGccacGCUGCGUCGAGuaGUUCg -3'
miRNA:   3'- -CGCGCGGGAgC----UGGCGCGGCUC--CGAG- -5'
23238 3' -64.2 NC_005259.1 + 1376 0.67 0.285315
Target:  5'- cGCGcCGCCCgCGAggcCCGCGCaUGAGcCUCu -3'
miRNA:   3'- -CGC-GCGGGaGCU---GGCGCG-GCUCcGAG- -5'
23238 3' -64.2 NC_005259.1 + 16543 0.67 0.283325
Target:  5'- gGUGCGCCCgagCGAccagagaucCCGCccaccgggcagaucGCCGAGGacaUCg -3'
miRNA:   3'- -CGCGCGGGa--GCU---------GGCG--------------CGGCUCCg--AG- -5'
23238 3' -64.2 NC_005259.1 + 6088 0.68 0.278724
Target:  5'- -gGaCGCCCUCaacGCCGagauCGCCGAGGC-Cg -3'
miRNA:   3'- cgC-GCGGGAGc--UGGC----GCGGCUCCGaG- -5'
23238 3' -64.2 NC_005259.1 + 36613 0.68 0.278724
Target:  5'- aCGCGaCCCUUGccgcCCGCGCCGcccgcaAGGCcCg -3'
miRNA:   3'- cGCGC-GGGAGCu---GGCGCGGC------UCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.