Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23238 | 3' | -64.2 | NC_005259.1 | + | 6088 | 0.68 | 0.278724 |
Target: 5'- -gGaCGCCCUCaacGCCGagauCGCCGAGGC-Cg -3' miRNA: 3'- cgC-GCGGGAGc--UGGC----GCGGCUCCGaG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 22982 | 0.68 | 0.272256 |
Target: 5'- uCGUGCCCggugUCGACgC-CGCCGAGGUc- -3' miRNA: 3'- cGCGCGGG----AGCUG-GcGCGGCUCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 40625 | 0.68 | 0.265909 |
Target: 5'- uCGCGCacgaaCUCGauGCCGuCGCCGAGaaagucauGCUCg -3' miRNA: 3'- cGCGCGg----GAGC--UGGC-GCGGCUC--------CGAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 28715 | 0.68 | 0.265909 |
Target: 5'- aGCGCGaacaUCGACCGUcucaagGCCGAGGgUUa -3' miRNA: 3'- -CGCGCggg-AGCUGGCG------CGGCUCCgAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 5515 | 0.68 | 0.259683 |
Target: 5'- cGCGCGCCg-CGcCCGCaaGCUGuGGCUg -3' miRNA: 3'- -CGCGCGGgaGCuGGCG--CGGCuCCGAg -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 20610 | 0.68 | 0.259683 |
Target: 5'- uGCgGCGCaCCgCGACCGUGUCGAuGcGUUCg -3' miRNA: 3'- -CG-CGCG-GGaGCUGGCGCGGCU-C-CGAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 9151 | 0.69 | 0.241715 |
Target: 5'- uCGUGCCCgUCGACgGCauGCCGGuGGCa- -3' miRNA: 3'- cGCGCGGG-AGCUGgCG--CGGCU-CCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 4427 | 0.69 | 0.241135 |
Target: 5'- cGCGCGCCCgaggUCGAgCCGC-CCGugcgaguGGGCa- -3' miRNA: 3'- -CGCGCGGG----AGCU-GGCGcGGC-------UCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 34862 | 0.69 | 0.239977 |
Target: 5'- gGCGUGUCCUCGuCgGUGCCGgaccggggugccucGGGCa- -3' miRNA: 3'- -CGCGCGGGAGCuGgCGCGGC--------------UCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 50410 | 0.69 | 0.235961 |
Target: 5'- aGCGCGCcggugCCUUGACCG-GCuCGggcagcggugcGGGCUCg -3' miRNA: 3'- -CGCGCG-----GGAGCUGGCgCG-GC-----------UCCGAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 45410 | 0.69 | 0.235961 |
Target: 5'- aGCGCGCUgaUGGCCGcCGCCGcuGcCUCg -3' miRNA: 3'- -CGCGCGGgaGCUGGC-GCGGCucC-GAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 23705 | 0.69 | 0.230321 |
Target: 5'- cCGCGUCg-UGAUCGCGCCGGacGGUUCg -3' miRNA: 3'- cGCGCGGgaGCUGGCGCGGCU--CCGAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 11010 | 0.69 | 0.230321 |
Target: 5'- cCGCGCCg--GA-CGCGCCGAGGCa- -3' miRNA: 3'- cGCGCGGgagCUgGCGCGGCUCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 9518 | 0.69 | 0.230321 |
Target: 5'- uCGCGCgCgUCGACCGcCGCCG-GGUc- -3' miRNA: 3'- cGCGCG-GgAGCUGGC-GCGGCuCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 4644 | 0.69 | 0.230321 |
Target: 5'- -aGUGCCCgCGcACCGCGCCuacGGGCa- -3' miRNA: 3'- cgCGCGGGaGC-UGGCGCGGc--UCCGag -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 8146 | 0.69 | 0.224796 |
Target: 5'- cCGCGCCCUCG-UUGCucuggccaugGCCuGAGGCUa -3' miRNA: 3'- cGCGCGGGAGCuGGCG----------CGG-CUCCGAg -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 19427 | 0.69 | 0.224796 |
Target: 5'- uCGUGCUcgCUCGACCuCGCCccGAGGCUg -3' miRNA: 3'- cGCGCGG--GAGCUGGcGCGG--CUCCGAg -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 66258 | 0.7 | 0.203812 |
Target: 5'- aGCGCgGCCCgCG-CCGgGCgGcGGCUCa -3' miRNA: 3'- -CGCG-CGGGaGCuGGCgCGgCuCCGAG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 42197 | 0.7 | 0.179988 |
Target: 5'- uGCGCGCCgUCGcgauggaugcccGCCGCGCCGccguccccGGC-Ca -3' miRNA: 3'- -CGCGCGGgAGC------------UGGCGCGGCu-------CCGaG- -5' |
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23238 | 3' | -64.2 | NC_005259.1 | + | 60521 | 0.71 | 0.17553 |
Target: 5'- aGUGCGCCa-UGGCCGgGCCGGGacgcagccGCUCg -3' miRNA: 3'- -CGCGCGGgaGCUGGCgCGGCUC--------CGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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