miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23240 3' -57.5 NC_005259.1 + 6105 0.66 0.684352
Target:  5'- aGAuCGcCGAGgCCGagGCCGCCGcuACg -3'
miRNA:   3'- cCUuGC-GCUCgGGCaaCGGCGGCu-UG- -5'
23240 3' -57.5 NC_005259.1 + 44971 0.66 0.694834
Target:  5'- cGGGAUGCcgaGGGCCgGUgcgaCUGCCGAGg -3'
miRNA:   3'- -CCUUGCG---CUCGGgCAac--GGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 3996 0.66 0.694834
Target:  5'- cGAugGCGGGCCgCGUcccCCgGuuGAGCa -3'
miRNA:   3'- cCUugCGCUCGG-GCAac-GG-CggCUUG- -5'
23240 3' -57.5 NC_005259.1 + 25906 0.66 0.673825
Target:  5'- aGGAugGCcgccuGAG-CCGccGCCGCCGGu- -3'
miRNA:   3'- -CCUugCG-----CUCgGGCaaCGGCGGCUug -5'
23240 3' -57.5 NC_005259.1 + 40557 0.66 0.67277
Target:  5'- -cGACGCGcGCCCGcgcggugUUGCUGUCGGcgGCu -3'
miRNA:   3'- ccUUGCGCuCGGGC-------AACGGCGGCU--UG- -5'
23240 3' -57.5 NC_005259.1 + 36237 0.66 0.67277
Target:  5'- uGGccAGCGCGAGCgCC--UGCgucggcagcgccaCGCCGGACa -3'
miRNA:   3'- -CC--UUGCGCUCG-GGcaACG-------------GCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 47046 0.66 0.66749
Target:  5'- gGGAucuGCGCGAGCgUGUUGgugagcgaggcgagCGCCGAGa -3'
miRNA:   3'- -CCU---UGCGCUCGgGCAACg-------------GCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 8665 0.66 0.65267
Target:  5'- cGGGcugccACGCGGGCaaCGggGCCGCCu--- -3'
miRNA:   3'- -CCU-----UGCGCUCGg-GCaaCGGCGGcuug -5'
23240 3' -57.5 NC_005259.1 + 26443 0.67 0.589067
Target:  5'- cGAGCggGCGGGCCgGUggGCCGauguggaaCGAGCa -3'
miRNA:   3'- cCUUG--CGCUCGGgCAa-CGGCg-------GCUUG- -5'
23240 3' -57.5 NC_005259.1 + 31403 0.67 0.599631
Target:  5'- cGGAGCacaGCGc-CCCGaggucGCCGCUGAGCa -3'
miRNA:   3'- -CCUUG---CGCucGGGCaa---CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 29061 0.67 0.589067
Target:  5'- cGAGCGCGguaucGGCCCGaucugcgcUGCCaagGCCGggUg -3'
miRNA:   3'- cCUUGCGC-----UCGGGCa-------ACGG---CGGCuuG- -5'
23240 3' -57.5 NC_005259.1 + 61255 0.67 0.589067
Target:  5'- cGggUGCGAGCaugcgaCCGUcgcuggucucgaUGCCGaCGAACg -3'
miRNA:   3'- cCuuGCGCUCG------GGCA------------ACGGCgGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 1810 0.67 0.594346
Target:  5'- uGGccGACGCGAGCaaucccgCCGaccugcucgccgcUGCCGCCGAGg -3'
miRNA:   3'- -CC--UUGCGCUCG-------GGCa------------ACGGCGGCUUg -5'
23240 3' -57.5 NC_005259.1 + 36120 0.67 0.610221
Target:  5'- uGAGCGUaAGCa-GUuggGCCGCCGGGCu -3'
miRNA:   3'- cCUUGCGcUCGggCAa--CGGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 43202 0.67 0.610221
Target:  5'- cGGcGAUGuCGAcGCCCGccUGacCCGCCGAGCu -3'
miRNA:   3'- -CC-UUGC-GCU-CGGGCa-AC--GGCGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 45636 0.67 0.620828
Target:  5'- cGGGCaGCGcGCCgG-UGCCGCCguGAACa -3'
miRNA:   3'- cCUUG-CGCuCGGgCaACGGCGG--CUUG- -5'
23240 3' -57.5 NC_005259.1 + 8425 0.67 0.620828
Target:  5'- cGAGCauGCGAuGCUCGUUGCCGgUGGu- -3'
miRNA:   3'- cCUUG--CGCU-CGGGCAACGGCgGCUug -5'
23240 3' -57.5 NC_005259.1 + 21454 0.67 0.631444
Target:  5'- aGAACGCu-GCCCGUgagGCUuugaaGCCGAuccGCg -3'
miRNA:   3'- cCUUGCGcuCGGGCAa--CGG-----CGGCU---UG- -5'
23240 3' -57.5 NC_005259.1 + 42968 0.67 0.631444
Target:  5'- cGAACGgGAuGCCggggaucauCGUUGCCgccccGCCGAACn -3'
miRNA:   3'- cCUUGCgCU-CGG---------GCAACGG-----CGGCUUG- -5'
23240 3' -57.5 NC_005259.1 + 38933 0.68 0.557608
Target:  5'- cGGuguUGCuGuGCCCGgugccgcUGCCGCCGAGa -3'
miRNA:   3'- -CCuu-GCG-CuCGGGCa------ACGGCGGCUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.